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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Species_name = "Pyrolobus fumarii"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX469421 Pyrolobus fumarii 50.5389718076285 2412.0 observed 1 0
AX469431 Pyrolobus fumarii 50.5389718076285 2412.0 observed 1 0
AX469433 Pyrolobus fumarii 50.787728026534 2412.0 observed 1 0
BD080287 Pyrolobus fumarii 50.5389718076285 2412.0 observed 1 0
CS017649 Pyrolobus fumarii 55.8967201674808 4299.0 observed 0 0
CS017655 Pyrolobus fumarii 52.5762355415352 951.0 observed 1 1
DD051387 Pyrolobus fumarii 50.5389718076285 2412.0 observed 1 1
DD051392 Pyrolobus fumarii 50.5389718076285 2412.0 observed 1 0
DD051393 Pyrolobus fumarii 50.787728026534 2412.0 observed 1 1
DM191850 Pyrolobus fumarii 40.5940594059406 909.0 observed 1 1
HI576851 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 0
HV334174 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 1
HV442815 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 0
HZ036397 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 0
HZ426448 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 0
JE981783 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 0
LF645951 Pyrolobus fumarii 60.3648424543947 1206.0 observed 1 0
OF125045 Pyrolobus fumarii 58.4474885844749 876.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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