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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

30 rows where Species_name = "Ruegeria pomeroyi"

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Suggested facets: GC_content, Sequence_length

Is_annotated 2

  • 1 22
  • 0 8

Species_name 1

  • Ruegeria pomeroyi · 30 ✖

Sequence_status 1

  • observed 30

Is_protein_coding_sequence 1

  • 1 30
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DD438133 Ruegeria pomeroyi 66.8178382464097 1323.0 observed 1 1
DI444353 Ruegeria pomeroyi 67.2043010752688 1302.0 observed 1 0
FB808225 Ruegeria pomeroyi 64.6903820816864 1518.0 observed 1 1
GM953543 Ruegeria pomeroyi 65.0793650793651 315.0 observed 1 1
GN095835 Ruegeria pomeroyi 68.6540198735321 1107.0 observed 1 1
GN102495 Ruegeria pomeroyi 62.5964912280702 1425.0 observed 1 1
GN104666 Ruegeria pomeroyi 63.5802469135802 1296.0 observed 1 1
GN106711 Ruegeria pomeroyi 59.8148148148148 540.0 observed 1 1
GN122765 Ruegeria pomeroyi 62.7642276422764 1230.0 observed 1 1
GN128498 Ruegeria pomeroyi 66.1904761904762 840.0 observed 1 1
GN129955 Ruegeria pomeroyi 62.7642276422764 1230.0 observed 1 0
HB438011 Ruegeria pomeroyi 62.5954198473282 393.0 observed 1 1
HB678284 Ruegeria pomeroyi 64.6903820816864 1518.0 observed 1 0
HB971210 Ruegeria pomeroyi 63.9367816091954 696.0 observed 1 1
HC464134 Ruegeria pomeroyi 62.9768605378362 1599.0 observed 1 1
HC498291 Ruegeria pomeroyi 62.9911280101394 789.0 observed 1 1
HC505816 Ruegeria pomeroyi 61.5900383141762 1044.0 observed 1 1
HC744143 Ruegeria pomeroyi 67.7448337825696 1113.0 observed 1 1
HC748644 Ruegeria pomeroyi 61.5900383141762 1044.0 observed 1 0
HC749142 Ruegeria pomeroyi 65.9985152190052 1347.0 observed 1 1
HD028620 Ruegeria pomeroyi 63.9367816091954 696.0 observed 1 0
HW809936 Ruegeria pomeroyi 67.2043010752688 1302.0 observed 1 1
LF150980 Ruegeria pomeroyi 67.2043010752688 1302.0 observed 1 0
LG111834 Ruegeria pomeroyi 67.2043010752688 1302.0 observed 1 0
LQ244374 Ruegeria pomeroyi 36.75 1200.0 observed 1 1
LQ244383 Ruegeria pomeroyi 38.047138047138 891.0 observed 1 1
LY657366 Ruegeria pomeroyi 55.5924695459579 903.0 observed 1 1
LY712847 Ruegeria pomeroyi 55.1005747126437 1392.0 observed 1 1
LY923141 Ruegeria pomeroyi 51.2016718913271 957.0 observed 1 1
MA164460 Ruegeria pomeroyi 67.2043010752688 1302.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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