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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

423 rows where Is_protein_coding_sequence = 1 and Species_name = "Ruegeria pomeroyi dss-3"

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These facets timed out: Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Ruegeria pomeroyi dss-3 · 323 ✖

Sequence_status 1

  • observed 323
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB698516 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB700866 Ruegeria pomeroyi dss-3 67.1691792294807 1791.0 observed 1 0
HB704206 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB706468 Ruegeria pomeroyi dss-3 64.8587570621469 885.0 observed 1 0
HB707349 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB714167 Ruegeria pomeroyi dss-3 63.2978723404255 564.0 observed 1 0
HB718034 Ruegeria pomeroyi dss-3 63.3401221995927 1473.0 observed 1 0
HB721623 Ruegeria pomeroyi dss-3 57.9487179487179 780.0 observed 1 0
HB723591 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB729160 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB737154 Ruegeria pomeroyi dss-3 65.8021133525456 1041.0 observed 1 0
HB738302 Ruegeria pomeroyi dss-3 57.9487179487179 780.0 observed 1 0
HB739323 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB740539 Ruegeria pomeroyi dss-3 63.2978723404255 564.0 observed 1 0
HB748085 Ruegeria pomeroyi dss-3 67.1691792294807 1791.0 observed 1 0
HB748943 Ruegeria pomeroyi dss-3 64.8587570621469 885.0 observed 1 0
HB749838 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB753727 Ruegeria pomeroyi dss-3 63.2978723404255 564.0 observed 1 0
HB757392 Ruegeria pomeroyi dss-3 57.9487179487179 780.0 observed 1 0
HB758442 Ruegeria pomeroyi dss-3 69.828722002635 759.0 observed 1 0
HB764790 Ruegeria pomeroyi dss-3 63.3401221995927 1473.0 observed 1 0
HB804318 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 1
HB804631 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB805010 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB805888 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB806947 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB808340 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB809813 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB813655 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB814304 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB815519 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB816939 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB817323 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB817487 Ruegeria pomeroyi dss-3 64.8587570621469 885.0 observed 1 0
HB823621 Ruegeria pomeroyi dss-3 65.0882079851439 1077.0 observed 1 0
HB830376 Ruegeria pomeroyi dss-3 65.5244029075805 963.0 observed 1 0
HB832617 Ruegeria pomeroyi dss-3 63.720073664825 1629.0 observed 1 1
HB896760 Ruegeria pomeroyi dss-3 65.4150197628458 1518.0 observed 1 1
HB896762 Ruegeria pomeroyi dss-3 61.4219114219114 1716.0 observed 1 1
HB897634 Ruegeria pomeroyi dss-3 64.4757433489828 639.0 observed 1 1
HB897971 Ruegeria pomeroyi dss-3 58.1560283687943 564.0 observed 1 1
HB900384 Ruegeria pomeroyi dss-3 65.6497175141243 885.0 observed 1 1
HB900386 Ruegeria pomeroyi dss-3 63.4228187919463 894.0 observed 1 1
HB901708 Ruegeria pomeroyi dss-3 64.2820903094876 1971.0 observed 1 1
HB904055 Ruegeria pomeroyi dss-3 63.62286562732 1347.0 observed 1 1
HB904057 Ruegeria pomeroyi dss-3 69.1480562448304 1209.0 observed 1 1
HB904551 Ruegeria pomeroyi dss-3 65.1696606786427 1002.0 observed 1 1
HB905094 Ruegeria pomeroyi dss-3 59.8591549295775 426.0 observed 1 1
HB906178 Ruegeria pomeroyi dss-3 65.9604519774011 1416.0 observed 1 1
HB907041 Ruegeria pomeroyi dss-3 65.6167979002625 762.0 observed 1 1
HB908265 Ruegeria pomeroyi dss-3 65.5405405405405 1332.0 observed 1 1
HB909713 Ruegeria pomeroyi dss-3 67.2636815920398 1005.0 observed 1 1
HB912379 Ruegeria pomeroyi dss-3 65.021645021645 1155.0 observed 1 1
HB913181 Ruegeria pomeroyi dss-3 69.3989071038251 1098.0 observed 1 1
HB913393 Ruegeria pomeroyi dss-3 66.3377192982456 912.0 observed 1 1
HB914226 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 1
HB917001 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 0
HB917102 Ruegeria pomeroyi dss-3 63.1521142229544 1821.0 observed 1 1
HB917509 Ruegeria pomeroyi dss-3 65.1035065483735 2367.0 observed 1 1
HB918446 Ruegeria pomeroyi dss-3 63.62286562732 1347.0 observed 1 0
HB918448 Ruegeria pomeroyi dss-3 69.1480562448304 1209.0 observed 1 0
HB918864 Ruegeria pomeroyi dss-3 66.2638469284995 993.0 observed 1 1
HB919410 Ruegeria pomeroyi dss-3 65.9604519774011 1416.0 observed 1 0
HB920836 Ruegeria pomeroyi dss-3 62.1593291404612 954.0 observed 1 0
HB920838 Ruegeria pomeroyi dss-3 68.8205128205128 975.0 observed 1 0
HB920840 Ruegeria pomeroyi dss-3 62.999185004075 1227.0 observed 1 1
HB920842 Ruegeria pomeroyi dss-3 62.5 1008.0 observed 1 0
HB920844 Ruegeria pomeroyi dss-3 69.4896851248643 921.0 observed 1 1
HB921807 Ruegeria pomeroyi dss-3 59.8591549295775 426.0 observed 1 0
HB922383 Ruegeria pomeroyi dss-3 63.6286919831224 1185.0 observed 1 0
HB922567 Ruegeria pomeroyi dss-3 65.6497175141243 885.0 observed 1 0
HB922569 Ruegeria pomeroyi dss-3 63.4228187919463 894.0 observed 1 0
HB923616 Ruegeria pomeroyi dss-3 59.0163934426229 1281.0 observed 1 1
HB923618 Ruegeria pomeroyi dss-3 57.5039494470774 1266.0 observed 1 1
HB923620 Ruegeria pomeroyi dss-3 62.749445676275 1353.0 observed 1 1
HB923622 Ruegeria pomeroyi dss-3 62.3154623154623 1287.0 observed 1 1
HB923624 Ruegeria pomeroyi dss-3 62.3630672926448 1278.0 observed 1 1
HB923626 Ruegeria pomeroyi dss-3 63.015873015873 1260.0 observed 1 1
HB923628 Ruegeria pomeroyi dss-3 63.6563876651982 1362.0 observed 1 1
HB923630 Ruegeria pomeroyi dss-3 63.9269406392694 1314.0 observed 1 1
HB923632 Ruegeria pomeroyi dss-3 62.5894134477825 1398.0 observed 1 1
HB923909 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 0
HB924678 Ruegeria pomeroyi dss-3 65.1035065483735 2367.0 observed 1 0
HB925615 Ruegeria pomeroyi dss-3 63.62286562732 1347.0 observed 1 0
HB925617 Ruegeria pomeroyi dss-3 69.1480562448304 1209.0 observed 1 0
HB926654 Ruegeria pomeroyi dss-3 65.9604519774011 1416.0 observed 1 0
HB928392 Ruegeria pomeroyi dss-3 65.6527249683143 789.0 observed 1 1
HB928394 Ruegeria pomeroyi dss-3 60.3703703703704 810.0 observed 1 1
HB929314 Ruegeria pomeroyi dss-3 64.2276422764228 738.0 observed 1 0
HB930624 Ruegeria pomeroyi dss-3 69.3989071038251 1098.0 observed 1 0
HB931268 Ruegeria pomeroyi dss-3 67.2636815920398 1005.0 observed 1 0
HB931409 Ruegeria pomeroyi dss-3 66.3377192982456 912.0 observed 1 0
HB933107 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 0
HB934107 Ruegeria pomeroyi dss-3 69.1798941798942 756.0 observed 1 1
HB935359 Ruegeria pomeroyi dss-3 63.2183908045977 2001.0 observed 1 1
HB935361 Ruegeria pomeroyi dss-3 65.29262086514 1965.0 observed 1 1
HB936292 Ruegeria pomeroyi dss-3 64.2820903094876 1971.0 observed 1 0
HB936907 Ruegeria pomeroyi dss-3 66.7342799188641 1479.0 observed 1 1
HB937802 Ruegeria pomeroyi dss-3 65.0900900900901 444.0 observed 1 1
HB938426 Ruegeria pomeroyi dss-3 67.2636815920398 1005.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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