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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

423 rows where Species_name = "Ruegeria pomeroyi dss-3"

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Is_annotated 2

  • 0 173
  • 1 50

Species_name 1

  • Ruegeria pomeroyi dss-3 · 223 ✖

Sequence_status 1

  • observed 223

Is_protein_coding_sequence 1

  • 1 223
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB939634 Ruegeria pomeroyi dss-3 64.3822843822844 2145.0 observed 1 1
HB939636 Ruegeria pomeroyi dss-3 67.741935483871 2046.0 observed 1 1
HB939638 Ruegeria pomeroyi dss-3 67.381974248927 2097.0 observed 1 1
HB941074 Ruegeria pomeroyi dss-3 62.4113475177305 1128.0 observed 1 1
HB941795 Ruegeria pomeroyi dss-3 64.6532438478747 3129.0 observed 1 1
HB942403 Ruegeria pomeroyi dss-3 63.62286562732 1347.0 observed 1 0
HB942405 Ruegeria pomeroyi dss-3 69.1480562448304 1209.0 observed 1 0
HB943514 Ruegeria pomeroyi dss-3 65.9604519774011 1416.0 observed 1 0
HB943983 Ruegeria pomeroyi dss-3 65.863453815261 498.0 observed 1 1
HB944188 Ruegeria pomeroyi dss-3 64.4757433489828 639.0 observed 1 0
HB945712 Ruegeria pomeroyi dss-3 64.2276422764228 738.0 observed 1 0
HB946126 Ruegeria pomeroyi dss-3 63.3974358974359 1560.0 observed 1 1
HB946989 Ruegeria pomeroyi dss-3 65.9604519774011 1416.0 observed 1 0
HB947703 Ruegeria pomeroyi dss-3 69.3989071038251 1098.0 observed 1 0
HB948093 Ruegeria pomeroyi dss-3 67.2636815920398 1005.0 observed 1 0
HB949707 Ruegeria pomeroyi dss-3 63.0707762557078 1752.0 observed 1 1
HB950039 Ruegeria pomeroyi dss-3 69.1798941798942 756.0 observed 1 0
HB950586 Ruegeria pomeroyi dss-3 66.7342799188641 1479.0 observed 1 0
HB950926 Ruegeria pomeroyi dss-3 59.8591549295775 426.0 observed 1 0
HB951706 Ruegeria pomeroyi dss-3 63.5338345864662 798.0 observed 1 1
HB951708 Ruegeria pomeroyi dss-3 64.8854961832061 786.0 observed 1 1
HB953024 Ruegeria pomeroyi dss-3 65.021645021645 1155.0 observed 1 0
HB954764 Ruegeria pomeroyi dss-3 65.9604519774011 1416.0 observed 1 0
HB956155 Ruegeria pomeroyi dss-3 67.2636815920398 1005.0 observed 1 0
HB957196 Ruegeria pomeroyi dss-3 66.9317428760769 1509.0 observed 1 1
HB958629 Ruegeria pomeroyi dss-3 66.135881104034 942.0 observed 1 1
HB959394 Ruegeria pomeroyi dss-3 64.2276422764228 738.0 observed 1 0
HB959878 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 0
HB960161 Ruegeria pomeroyi dss-3 63.1521142229544 1821.0 observed 1 0
HB960568 Ruegeria pomeroyi dss-3 65.1035065483735 2367.0 observed 1 0
HB961075 Ruegeria pomeroyi dss-3 65.1696606786427 1002.0 observed 1 0
HB962374 Ruegeria pomeroyi dss-3 68.9024390243902 984.0 observed 1 1
HB962376 Ruegeria pomeroyi dss-3 66.280193236715 1035.0 observed 1 1
HB962787 Ruegeria pomeroyi dss-3 59.0163934426229 1281.0 observed 1 0
HB962789 Ruegeria pomeroyi dss-3 57.5039494470774 1266.0 observed 1 0
HB962791 Ruegeria pomeroyi dss-3 62.749445676275 1353.0 observed 1 0
HB962793 Ruegeria pomeroyi dss-3 62.3154623154623 1287.0 observed 1 0
HB962795 Ruegeria pomeroyi dss-3 62.3630672926448 1278.0 observed 1 0
HB962797 Ruegeria pomeroyi dss-3 63.015873015873 1260.0 observed 1 0
HB962799 Ruegeria pomeroyi dss-3 63.6563876651982 1362.0 observed 1 0
HB962801 Ruegeria pomeroyi dss-3 63.9269406392694 1314.0 observed 1 0
HB962803 Ruegeria pomeroyi dss-3 62.5894134477825 1398.0 observed 1 0
HB963842 Ruegeria pomeroyi dss-3 69.1798941798942 756.0 observed 1 0
HB964323 Ruegeria pomeroyi dss-3 63.2183908045977 2001.0 observed 1 0
HB964325 Ruegeria pomeroyi dss-3 65.29262086514 1965.0 observed 1 0
HB964490 Ruegeria pomeroyi dss-3 66.9317428760769 1509.0 observed 1 0
HB965491 Ruegeria pomeroyi dss-3 66.7162698412698 2016.0 observed 1 1
HB965727 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 0
HB967422 Ruegeria pomeroyi dss-3 67.2636815920398 1005.0 observed 1 0
HB967924 Ruegeria pomeroyi dss-3 63.023679417122 1647.0 observed 1 1
HB968261 Ruegeria pomeroyi dss-3 66.1904761904762 840.0 observed 1 0
HB969324 Ruegeria pomeroyi dss-3 68.2373472949389 1146.0 observed 1 1
HB969990 Ruegeria pomeroyi dss-3 69.1503267973856 765.0 observed 1 1
HB970369 Ruegeria pomeroyi dss-3 63.6363636363636 594.0 observed 1 1
HB970371 Ruegeria pomeroyi dss-3 63.5687732342007 807.0 observed 1 1
HB971579 Ruegeria pomeroyi dss-3 65.6050955414013 1413.0 observed 1 1
HB972065 Ruegeria pomeroyi dss-3 66.775956284153 915.0 observed 1 1
HB972067 Ruegeria pomeroyi dss-3 65.7556270096463 1866.0 observed 1 1
HB974177 Ruegeria pomeroyi dss-3 69.055036344756 963.0 observed 1 0
HB974373 Ruegeria pomeroyi dss-3 61.9904076738609 834.0 observed 1 1
HB974482 Ruegeria pomeroyi dss-3 70.8333333333333 456.0 observed 1 1
HC001791 Ruegeria pomeroyi dss-3 68.5393258426966 801.0 observed 1 1
HC463084 Ruegeria pomeroyi dss-3 64.46735395189 1455.0 observed 1 1
HC495467 Ruegeria pomeroyi dss-3 64.9765258215962 1065.0 observed 1 1
HC496378 Ruegeria pomeroyi dss-3 62.531328320802 1596.0 observed 1 1
HC497167 Ruegeria pomeroyi dss-3 63.7071651090343 642.0 observed 1 1
HC497169 Ruegeria pomeroyi dss-3 67.4140508221226 669.0 observed 1 1
HC498808 Ruegeria pomeroyi dss-3 64.9765258215962 1065.0 observed 1 0
HC506513 Ruegeria pomeroyi dss-3 67.6767676767677 891.0 observed 1 0
HC507058 Ruegeria pomeroyi dss-3 64.8148148148148 1458.0 observed 1 1
HC507060 Ruegeria pomeroyi dss-3 63.7052341597796 1452.0 observed 1 1
HC743284 Ruegeria pomeroyi dss-3 58.8888888888889 360.0 observed 1 1
HC744530 Ruegeria pomeroyi dss-3 64.4444444444444 1080.0 observed 1 1
HC744805 Ruegeria pomeroyi dss-3 65.4855643044619 762.0 observed 1 1
HC745740 Ruegeria pomeroyi dss-3 64.5636172450053 951.0 observed 1 1
HC749848 Ruegeria pomeroyi dss-3 63.4975181366934 2619.0 observed 1 1
HC750687 Ruegeria pomeroyi dss-3 69.7729988052569 837.0 observed 1 1
HC753264 Ruegeria pomeroyi dss-3 63.5802469135802 1296.0 observed 1 0
HC903879 Ruegeria pomeroyi dss-3 62.7976190476191 1344.0 observed 1 1
HC904292 Ruegeria pomeroyi dss-3 65.6050955414013 1413.0 observed 1 0
HC906286 Ruegeria pomeroyi dss-3 62.7976190476191 1344.0 observed 1 0
HC906539 Ruegeria pomeroyi dss-3 66.1224489795918 735.0 observed 1 1
HC909777 Ruegeria pomeroyi dss-3 64.3507030603805 1209.0 observed 1 1
HC909779 Ruegeria pomeroyi dss-3 64.6129541864139 1266.0 observed 1 1
HC910183 Ruegeria pomeroyi dss-3 58.868501529052 654.0 observed 1 1
HC910185 Ruegeria pomeroyi dss-3 59.1133004926108 609.0 observed 1 1
HC911302 Ruegeria pomeroyi dss-3 65.9259259259259 270.0 observed 1 1
HC913101 Ruegeria pomeroyi dss-3 64.3507030603805 1209.0 observed 1 0
HC913103 Ruegeria pomeroyi dss-3 64.6129541864139 1266.0 observed 1 0
HC913858 Ruegeria pomeroyi dss-3 62.7976190476191 1344.0 observed 1 0
HC916439 Ruegeria pomeroyi dss-3 64.5636172450053 951.0 observed 1 0
HC954169 Ruegeria pomeroyi dss-3 65.4150197628458 1518.0 observed 1 0
HC954171 Ruegeria pomeroyi dss-3 61.4219114219114 1716.0 observed 1 0
HC955043 Ruegeria pomeroyi dss-3 64.4757433489828 639.0 observed 1 0
HC955380 Ruegeria pomeroyi dss-3 58.1560283687943 564.0 observed 1 0
HC957793 Ruegeria pomeroyi dss-3 65.6497175141243 885.0 observed 1 0
HC957795 Ruegeria pomeroyi dss-3 63.4228187919463 894.0 observed 1 0
HC959117 Ruegeria pomeroyi dss-3 64.2820903094876 1971.0 observed 1 0
HC961464 Ruegeria pomeroyi dss-3 63.62286562732 1347.0 observed 1 0
HC961466 Ruegeria pomeroyi dss-3 69.1480562448304 1209.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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