Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
423 rows where Species_name = "Ruegeria pomeroyi dss-3"
This data as json, CSV (advanced)
These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated
Species_name 1
- Ruegeria pomeroyi dss-3 · 223 ✖
Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
---|---|---|---|---|---|---|
HB939634 | Ruegeria pomeroyi dss-3 | 64.3822843822844 | 2145.0 | observed | 1 | 1 |
HB939636 | Ruegeria pomeroyi dss-3 | 67.741935483871 | 2046.0 | observed | 1 | 1 |
HB939638 | Ruegeria pomeroyi dss-3 | 67.381974248927 | 2097.0 | observed | 1 | 1 |
HB941074 | Ruegeria pomeroyi dss-3 | 62.4113475177305 | 1128.0 | observed | 1 | 1 |
HB941795 | Ruegeria pomeroyi dss-3 | 64.6532438478747 | 3129.0 | observed | 1 | 1 |
HB942403 | Ruegeria pomeroyi dss-3 | 63.62286562732 | 1347.0 | observed | 1 | 0 |
HB942405 | Ruegeria pomeroyi dss-3 | 69.1480562448304 | 1209.0 | observed | 1 | 0 |
HB943514 | Ruegeria pomeroyi dss-3 | 65.9604519774011 | 1416.0 | observed | 1 | 0 |
HB943983 | Ruegeria pomeroyi dss-3 | 65.863453815261 | 498.0 | observed | 1 | 1 |
HB944188 | Ruegeria pomeroyi dss-3 | 64.4757433489828 | 639.0 | observed | 1 | 0 |
HB945712 | Ruegeria pomeroyi dss-3 | 64.2276422764228 | 738.0 | observed | 1 | 0 |
HB946126 | Ruegeria pomeroyi dss-3 | 63.3974358974359 | 1560.0 | observed | 1 | 1 |
HB946989 | Ruegeria pomeroyi dss-3 | 65.9604519774011 | 1416.0 | observed | 1 | 0 |
HB947703 | Ruegeria pomeroyi dss-3 | 69.3989071038251 | 1098.0 | observed | 1 | 0 |
HB948093 | Ruegeria pomeroyi dss-3 | 67.2636815920398 | 1005.0 | observed | 1 | 0 |
HB949707 | Ruegeria pomeroyi dss-3 | 63.0707762557078 | 1752.0 | observed | 1 | 1 |
HB950039 | Ruegeria pomeroyi dss-3 | 69.1798941798942 | 756.0 | observed | 1 | 0 |
HB950586 | Ruegeria pomeroyi dss-3 | 66.7342799188641 | 1479.0 | observed | 1 | 0 |
HB950926 | Ruegeria pomeroyi dss-3 | 59.8591549295775 | 426.0 | observed | 1 | 0 |
HB951706 | Ruegeria pomeroyi dss-3 | 63.5338345864662 | 798.0 | observed | 1 | 1 |
HB951708 | Ruegeria pomeroyi dss-3 | 64.8854961832061 | 786.0 | observed | 1 | 1 |
HB953024 | Ruegeria pomeroyi dss-3 | 65.021645021645 | 1155.0 | observed | 1 | 0 |
HB954764 | Ruegeria pomeroyi dss-3 | 65.9604519774011 | 1416.0 | observed | 1 | 0 |
HB956155 | Ruegeria pomeroyi dss-3 | 67.2636815920398 | 1005.0 | observed | 1 | 0 |
HB957196 | Ruegeria pomeroyi dss-3 | 66.9317428760769 | 1509.0 | observed | 1 | 1 |
HB958629 | Ruegeria pomeroyi dss-3 | 66.135881104034 | 942.0 | observed | 1 | 1 |
HB959394 | Ruegeria pomeroyi dss-3 | 64.2276422764228 | 738.0 | observed | 1 | 0 |
HB959878 | Ruegeria pomeroyi dss-3 | 67.6767676767677 | 891.0 | observed | 1 | 0 |
HB960161 | Ruegeria pomeroyi dss-3 | 63.1521142229544 | 1821.0 | observed | 1 | 0 |
HB960568 | Ruegeria pomeroyi dss-3 | 65.1035065483735 | 2367.0 | observed | 1 | 0 |
HB961075 | Ruegeria pomeroyi dss-3 | 65.1696606786427 | 1002.0 | observed | 1 | 0 |
HB962374 | Ruegeria pomeroyi dss-3 | 68.9024390243902 | 984.0 | observed | 1 | 1 |
HB962376 | Ruegeria pomeroyi dss-3 | 66.280193236715 | 1035.0 | observed | 1 | 1 |
HB962787 | Ruegeria pomeroyi dss-3 | 59.0163934426229 | 1281.0 | observed | 1 | 0 |
HB962789 | Ruegeria pomeroyi dss-3 | 57.5039494470774 | 1266.0 | observed | 1 | 0 |
HB962791 | Ruegeria pomeroyi dss-3 | 62.749445676275 | 1353.0 | observed | 1 | 0 |
HB962793 | Ruegeria pomeroyi dss-3 | 62.3154623154623 | 1287.0 | observed | 1 | 0 |
HB962795 | Ruegeria pomeroyi dss-3 | 62.3630672926448 | 1278.0 | observed | 1 | 0 |
HB962797 | Ruegeria pomeroyi dss-3 | 63.015873015873 | 1260.0 | observed | 1 | 0 |
HB962799 | Ruegeria pomeroyi dss-3 | 63.6563876651982 | 1362.0 | observed | 1 | 0 |
HB962801 | Ruegeria pomeroyi dss-3 | 63.9269406392694 | 1314.0 | observed | 1 | 0 |
HB962803 | Ruegeria pomeroyi dss-3 | 62.5894134477825 | 1398.0 | observed | 1 | 0 |
HB963842 | Ruegeria pomeroyi dss-3 | 69.1798941798942 | 756.0 | observed | 1 | 0 |
HB964323 | Ruegeria pomeroyi dss-3 | 63.2183908045977 | 2001.0 | observed | 1 | 0 |
HB964325 | Ruegeria pomeroyi dss-3 | 65.29262086514 | 1965.0 | observed | 1 | 0 |
HB964490 | Ruegeria pomeroyi dss-3 | 66.9317428760769 | 1509.0 | observed | 1 | 0 |
HB965491 | Ruegeria pomeroyi dss-3 | 66.7162698412698 | 2016.0 | observed | 1 | 1 |
HB965727 | Ruegeria pomeroyi dss-3 | 67.6767676767677 | 891.0 | observed | 1 | 0 |
HB967422 | Ruegeria pomeroyi dss-3 | 67.2636815920398 | 1005.0 | observed | 1 | 0 |
HB967924 | Ruegeria pomeroyi dss-3 | 63.023679417122 | 1647.0 | observed | 1 | 1 |
HB968261 | Ruegeria pomeroyi dss-3 | 66.1904761904762 | 840.0 | observed | 1 | 0 |
HB969324 | Ruegeria pomeroyi dss-3 | 68.2373472949389 | 1146.0 | observed | 1 | 1 |
HB969990 | Ruegeria pomeroyi dss-3 | 69.1503267973856 | 765.0 | observed | 1 | 1 |
HB970369 | Ruegeria pomeroyi dss-3 | 63.6363636363636 | 594.0 | observed | 1 | 1 |
HB970371 | Ruegeria pomeroyi dss-3 | 63.5687732342007 | 807.0 | observed | 1 | 1 |
HB971579 | Ruegeria pomeroyi dss-3 | 65.6050955414013 | 1413.0 | observed | 1 | 1 |
HB972065 | Ruegeria pomeroyi dss-3 | 66.775956284153 | 915.0 | observed | 1 | 1 |
HB972067 | Ruegeria pomeroyi dss-3 | 65.7556270096463 | 1866.0 | observed | 1 | 1 |
HB974177 | Ruegeria pomeroyi dss-3 | 69.055036344756 | 963.0 | observed | 1 | 0 |
HB974373 | Ruegeria pomeroyi dss-3 | 61.9904076738609 | 834.0 | observed | 1 | 1 |
HB974482 | Ruegeria pomeroyi dss-3 | 70.8333333333333 | 456.0 | observed | 1 | 1 |
HC001791 | Ruegeria pomeroyi dss-3 | 68.5393258426966 | 801.0 | observed | 1 | 1 |
HC463084 | Ruegeria pomeroyi dss-3 | 64.46735395189 | 1455.0 | observed | 1 | 1 |
HC495467 | Ruegeria pomeroyi dss-3 | 64.9765258215962 | 1065.0 | observed | 1 | 1 |
HC496378 | Ruegeria pomeroyi dss-3 | 62.531328320802 | 1596.0 | observed | 1 | 1 |
HC497167 | Ruegeria pomeroyi dss-3 | 63.7071651090343 | 642.0 | observed | 1 | 1 |
HC497169 | Ruegeria pomeroyi dss-3 | 67.4140508221226 | 669.0 | observed | 1 | 1 |
HC498808 | Ruegeria pomeroyi dss-3 | 64.9765258215962 | 1065.0 | observed | 1 | 0 |
HC506513 | Ruegeria pomeroyi dss-3 | 67.6767676767677 | 891.0 | observed | 1 | 0 |
HC507058 | Ruegeria pomeroyi dss-3 | 64.8148148148148 | 1458.0 | observed | 1 | 1 |
HC507060 | Ruegeria pomeroyi dss-3 | 63.7052341597796 | 1452.0 | observed | 1 | 1 |
HC743284 | Ruegeria pomeroyi dss-3 | 58.8888888888889 | 360.0 | observed | 1 | 1 |
HC744530 | Ruegeria pomeroyi dss-3 | 64.4444444444444 | 1080.0 | observed | 1 | 1 |
HC744805 | Ruegeria pomeroyi dss-3 | 65.4855643044619 | 762.0 | observed | 1 | 1 |
HC745740 | Ruegeria pomeroyi dss-3 | 64.5636172450053 | 951.0 | observed | 1 | 1 |
HC749848 | Ruegeria pomeroyi dss-3 | 63.4975181366934 | 2619.0 | observed | 1 | 1 |
HC750687 | Ruegeria pomeroyi dss-3 | 69.7729988052569 | 837.0 | observed | 1 | 1 |
HC753264 | Ruegeria pomeroyi dss-3 | 63.5802469135802 | 1296.0 | observed | 1 | 0 |
HC903879 | Ruegeria pomeroyi dss-3 | 62.7976190476191 | 1344.0 | observed | 1 | 1 |
HC904292 | Ruegeria pomeroyi dss-3 | 65.6050955414013 | 1413.0 | observed | 1 | 0 |
HC906286 | Ruegeria pomeroyi dss-3 | 62.7976190476191 | 1344.0 | observed | 1 | 0 |
HC906539 | Ruegeria pomeroyi dss-3 | 66.1224489795918 | 735.0 | observed | 1 | 1 |
HC909777 | Ruegeria pomeroyi dss-3 | 64.3507030603805 | 1209.0 | observed | 1 | 1 |
HC909779 | Ruegeria pomeroyi dss-3 | 64.6129541864139 | 1266.0 | observed | 1 | 1 |
HC910183 | Ruegeria pomeroyi dss-3 | 58.868501529052 | 654.0 | observed | 1 | 1 |
HC910185 | Ruegeria pomeroyi dss-3 | 59.1133004926108 | 609.0 | observed | 1 | 1 |
HC911302 | Ruegeria pomeroyi dss-3 | 65.9259259259259 | 270.0 | observed | 1 | 1 |
HC913101 | Ruegeria pomeroyi dss-3 | 64.3507030603805 | 1209.0 | observed | 1 | 0 |
HC913103 | Ruegeria pomeroyi dss-3 | 64.6129541864139 | 1266.0 | observed | 1 | 0 |
HC913858 | Ruegeria pomeroyi dss-3 | 62.7976190476191 | 1344.0 | observed | 1 | 0 |
HC916439 | Ruegeria pomeroyi dss-3 | 64.5636172450053 | 951.0 | observed | 1 | 0 |
HC954169 | Ruegeria pomeroyi dss-3 | 65.4150197628458 | 1518.0 | observed | 1 | 0 |
HC954171 | Ruegeria pomeroyi dss-3 | 61.4219114219114 | 1716.0 | observed | 1 | 0 |
HC955043 | Ruegeria pomeroyi dss-3 | 64.4757433489828 | 639.0 | observed | 1 | 0 |
HC955380 | Ruegeria pomeroyi dss-3 | 58.1560283687943 | 564.0 | observed | 1 | 0 |
HC957793 | Ruegeria pomeroyi dss-3 | 65.6497175141243 | 885.0 | observed | 1 | 0 |
HC957795 | Ruegeria pomeroyi dss-3 | 63.4228187919463 | 894.0 | observed | 1 | 0 |
HC959117 | Ruegeria pomeroyi dss-3 | 64.2820903094876 | 1971.0 | observed | 1 | 0 |
HC961464 | Ruegeria pomeroyi dss-3 | 63.62286562732 | 1347.0 | observed | 1 | 0 |
HC961466 | Ruegeria pomeroyi dss-3 | 69.1480562448304 | 1209.0 | observed | 1 | 0 |
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CREATE TABLE Marine_Sequences ( Sequence_accession_number TEXT PRIMARY KEY, Species_name TEXT, GC_content TEXT, Sequence_length TEXT, Sequence_status TEXT, Is_protein_coding_sequence INTEGER, Is_annotated INTEGER, FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name), FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number) );