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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

156 rows where Is_annotated = 1 and Species_name = "Saccharophagus degradans 2-40"

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Species_name 1

  • Saccharophagus degradans 2-40 · 156 ✖

Sequence_status 1

  • observed 156

Is_protein_coding_sequence 1

  • 1 156

Is_annotated 1

  • 1 · 156 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS497438 Saccharophagus degradans 2-40 48.9614243323442 1011.0 observed 1 1
CS497440 Saccharophagus degradans 2-40 49.6932515337423 978.0 observed 1 1
FB332635 Saccharophagus degradans 2-40 45.1587301587302 1260.0 observed 1 1
FB332637 Saccharophagus degradans 2-40 45.3164556962025 1185.0 observed 1 1
FB783889 Saccharophagus degradans 2-40 48.3204134366925 1548.0 observed 1 1
FB784915 Saccharophagus degradans 2-40 51.4254385964912 912.0 observed 1 1
FB792019 Saccharophagus degradans 2-40 46.9503546099291 705.0 observed 1 1
FB798191 Saccharophagus degradans 2-40 46.0618846694796 1422.0 observed 1 1
FB798193 Saccharophagus degradans 2-40 47.4509803921569 1785.0 observed 1 1
FB808011 Saccharophagus degradans 2-40 52.2888459058672 1551.0 observed 1 1
FB845156 Saccharophagus degradans 2-40 44.6852425180599 969.0 observed 1 1
GM953603 Saccharophagus degradans 2-40 49.6774193548387 465.0 observed 1 1
GM954017 Saccharophagus degradans 2-40 46.3333333333333 1500.0 observed 1 1
GM955447 Saccharophagus degradans 2-40 46.0573476702509 558.0 observed 1 1
GM956786 Saccharophagus degradans 2-40 48.5875706214689 531.0 observed 1 1
GM957263 Saccharophagus degradans 2-40 51.7948717948718 585.0 observed 1 1
GM959738 Saccharophagus degradans 2-40 51.2565196775723 2109.0 observed 1 1
GM960797 Saccharophagus degradans 2-40 44.6570972886762 627.0 observed 1 1
GM960853 Saccharophagus degradans 2-40 44.8012232415902 654.0 observed 1 1
GM962435 Saccharophagus degradans 2-40 47.4494283201407 2274.0 observed 1 1
GM963232 Saccharophagus degradans 2-40 46.0426179604262 1314.0 observed 1 1
GN096584 Saccharophagus degradans 2-40 46.7984934086629 1062.0 observed 1 1
GN096872 Saccharophagus degradans 2-40 47.940074906367 267.0 observed 1 1
GN098037 Saccharophagus degradans 2-40 51.2262521588946 2895.0 observed 1 1
GN098930 Saccharophagus degradans 2-40 36.5875109938434 1137.0 observed 1 1
GN104328 Saccharophagus degradans 2-40 47.0308788598575 1263.0 observed 1 1
GN105133 Saccharophagus degradans 2-40 49.6558505408063 1017.0 observed 1 1
GN107087 Saccharophagus degradans 2-40 47.6999292285916 1413.0 observed 1 1
GN108648 Saccharophagus degradans 2-40 48.9151873767258 507.0 observed 1 1
GN109119 Saccharophagus degradans 2-40 47.7355072463768 1104.0 observed 1 1
GN109842 Saccharophagus degradans 2-40 49.8397435897436 624.0 observed 1 1
GN118986 Saccharophagus degradans 2-40 47.1450617283951 1296.0 observed 1 1
GN120035 Saccharophagus degradans 2-40 52.1062271062271 1092.0 observed 1 1
GN120369 Saccharophagus degradans 2-40 45.5555555555556 270.0 observed 1 1
GN120525 Saccharophagus degradans 2-40 50.8960573476703 1116.0 observed 1 1
GN120869 Saccharophagus degradans 2-40 46.9622331691297 1827.0 observed 1 1
GN121966 Saccharophagus degradans 2-40 50.1675041876047 1194.0 observed 1 1
GN122984 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 1
GN124488 Saccharophagus degradans 2-40 50.9043927648579 387.0 observed 1 1
GN125070 Saccharophagus degradans 2-40 51.1990407673861 834.0 observed 1 1
GN127172 Saccharophagus degradans 2-40 50.0998003992016 2004.0 observed 1 1
GN127843 Saccharophagus degradans 2-40 47.4043715846995 732.0 observed 1 1
HB443528 Saccharophagus degradans 2-40 49.1362763915547 1563.0 observed 1 1
HB897774 Saccharophagus degradans 2-40 50.4424778761062 678.0 observed 1 1
HB898243 Saccharophagus degradans 2-40 46.8805704099822 1122.0 observed 1 1
HB899885 Saccharophagus degradans 2-40 46.7859509609013 1509.0 observed 1 1
HB900273 Saccharophagus degradans 2-40 47.5448536355052 2118.0 observed 1 1
HB902060 Saccharophagus degradans 2-40 46.7140319715808 1689.0 observed 1 1
HB904157 Saccharophagus degradans 2-40 46.0426179604262 1314.0 observed 1 1
HB904736 Saccharophagus degradans 2-40 47.8138222849083 2127.0 observed 1 1
HB905152 Saccharophagus degradans 2-40 46.7592592592593 432.0 observed 1 1
HB905754 Saccharophagus degradans 2-40 44.2338072669826 633.0 observed 1 1
HB906288 Saccharophagus degradans 2-40 47.5985663082437 1395.0 observed 1 1
HB906290 Saccharophagus degradans 2-40 49.2790500424088 1179.0 observed 1 1
HB906292 Saccharophagus degradans 2-40 50.1118568232662 1788.0 observed 1 1
HB906294 Saccharophagus degradans 2-40 46.0717009916095 1311.0 observed 1 1
HB906296 Saccharophagus degradans 2-40 45.5304928989139 1197.0 observed 1 1
HB908365 Saccharophagus degradans 2-40 51.4393939393939 1320.0 observed 1 1
HB908367 Saccharophagus degradans 2-40 44.6496212121212 2112.0 observed 1 1
HB911480 Saccharophagus degradans 2-40 44.7101449275362 1380.0 observed 1 1
HB911482 Saccharophagus degradans 2-40 53.8677918424754 1422.0 observed 1 1
HB911484 Saccharophagus degradans 2-40 52.6427061310782 1419.0 observed 1 1
HB911710 Saccharophagus degradans 2-40 50.8064516129032 372.0 observed 1 1
HB912054 Saccharophagus degradans 2-40 43.6936936936937 1110.0 observed 1 1
HB912443 Saccharophagus degradans 2-40 44.9438202247191 1068.0 observed 1 1
HB913251 Saccharophagus degradans 2-40 53.411306042885 1026.0 observed 1 1
HB913475 Saccharophagus degradans 2-40 49.0445859872611 942.0 observed 1 1
HB914258 Saccharophagus degradans 2-40 49.2397660818714 855.0 observed 1 1
HB917635 Saccharophagus degradans 2-40 49.1510277033065 2238.0 observed 1 1
HB919708 Saccharophagus degradans 2-40 40.8239700374532 801.0 observed 1 1
HB920942 Saccharophagus degradans 2-40 49.8015873015873 1512.0 observed 1 1
HB923718 Saccharophagus degradans 2-40 45.7402812241522 1209.0 observed 1 1
HB923720 Saccharophagus degradans 2-40 42.7251732101617 1299.0 observed 1 1
HB929876 Saccharophagus degradans 2-40 47.787610619469 339.0 observed 1 1
HB929878 Saccharophagus degradans 2-40 43.3628318584071 339.0 observed 1 1
HB931884 Saccharophagus degradans 2-40 47.7058029689609 1482.0 observed 1 1
HB932799 Saccharophagus degradans 2-40 49.8039215686275 1020.0 observed 1 1
HB932801 Saccharophagus degradans 2-40 47.6190476190476 1008.0 observed 1 1
HB934185 Saccharophagus degradans 2-40 50.1412429378531 708.0 observed 1 1
HB934187 Saccharophagus degradans 2-40 50.3968253968254 756.0 observed 1 1
HB934648 Saccharophagus degradans 2-40 42.2535211267606 213.0 observed 1 1
HB935399 Saccharophagus degradans 2-40 47.6482617586912 1956.0 observed 1 1
HB936969 Saccharophagus degradans 2-40 46.6124661246612 1476.0 observed 1 1
HB937880 Saccharophagus degradans 2-40 47.4885844748858 438.0 observed 1 1
HB939690 Saccharophagus degradans 2-40 46.8605724838412 2166.0 observed 1 1
HB941170 Saccharophagus degradans 2-40 50.095785440613 1044.0 observed 1 1
HB941172 Saccharophagus degradans 2-40 46.5863453815261 747.0 observed 1 1
HB941913 Saccharophagus degradans 2-40 48.3716475095785 3132.0 observed 1 1
HB943105 Saccharophagus degradans 2-40 47.5897435897436 975.0 observed 1 1
HB944049 Saccharophagus degradans 2-40 49.6168582375479 522.0 observed 1 1
HB944765 Saccharophagus degradans 2-40 46.583850931677 1449.0 observed 1 1
HB944767 Saccharophagus degradans 2-40 49.8938428874735 1413.0 observed 1 1
HB946212 Saccharophagus degradans 2-40 47.5015812776724 1581.0 observed 1 1
HB947091 Saccharophagus degradans 2-40 51.025641025641 1560.0 observed 1 1
HB951780 Saccharophagus degradans 2-40 45.9558823529412 816.0 observed 1 1
HB952137 Saccharophagus degradans 2-40 48.7562189054726 1005.0 observed 1 1
HB952792 Saccharophagus degradans 2-40 48.4330484330484 1053.0 observed 1 1
HB957796 Saccharophagus degradans 2-40 47.953216374269 1197.0 observed 1 1
HB958334 Saccharophagus degradans 2-40 46.6666666666667 1695.0 observed 1 1
HB961726 Saccharophagus degradans 2-40 47.2990777338603 759.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 267.287ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT