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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

8 rows where Species_name = "Shewanella pealeana"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HJ398997 Shewanella pealeana 46.2121212121212 660.0 predicted 1 1
HJ978560 Shewanella pealeana 50.8974358974359 1560.0 predicted 1 1
HL836262 Shewanella pealeana 48.1981981981982 888.0 predicted 1 1
HL836560 Shewanella pealeana 49.2647058823529 1224.0 predicted 1 1
HL837966 Shewanella pealeana 47.5915221579962 1038.0 predicted 1 1
HL839034 Shewanella pealeana 45.8077709611452 489.0 predicted 1 1
HL839332 Shewanella pealeana 48.1171548117155 717.0 predicted 1 1
HL840738 Shewanella pealeana 43.801652892562 363.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 6401.585ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT