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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

101 rows where Species_name = "Shewanella putrefaciens"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Shewanella putrefaciens · 101 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX048560 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
AX048561 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
AX098605 Shewanella putrefaciens 48.9541432019308 2486.0 observed 0 0
AX110927 Shewanella putrefaciens 47.8097622027534 799.0 observed 0 0
AX111016 Shewanella putrefaciens 48.0136208853575 881.0 observed 1 0
AX111094 Shewanella putrefaciens 46.2962962962963 108.0 observed 0 0
AX111100 Shewanella putrefaciens 33.3333333333333 72.0 observed 0 0
AX111108 Shewanella putrefaciens 47.9674796747967 1107.0 observed 0 0
BD193246 Shewanella putrefaciens 43.9503892334081 37895.0 observed 0 0
BD193247 Shewanella putrefaciens 39.2567567567568 1480.0 observed 0 0
BD193250 Shewanella putrefaciens 35.4838709677419 217.0 observed 1 0
BD193251 Shewanella putrefaciens 46.5536723163842 885.0 observed 0 0
BD193252 Shewanella putrefaciens 47.4327628361858 409.0 observed 0 0
BD298750 Shewanella putrefaciens 48.9541432019308 2486.0 observed 0 0
BD395476 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
BD395477 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
DI386969 Shewanella putrefaciens 47.4153297682709 561.0 observed 1 0
DL240945 Shewanella putrefaciens 43.9503892334081 37895.0 observed 0 0
DL240946 Shewanella putrefaciens 39.2567567567568 1480.0 observed 0 0
DL240949 Shewanella putrefaciens 35.4838709677419 217.0 observed 1 0
DL240950 Shewanella putrefaciens 46.5536723163842 885.0 observed 0 0
DL240951 Shewanella putrefaciens 47.4327628361858 409.0 observed 0 0
DL241003 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 0
DL241004 Shewanella putrefaciens 45.3703703703704 864.0 observed 1 0
DL241005 Shewanella putrefaciens 46.7223028543783 8268.0 observed 1 0
DL241006 Shewanella putrefaciens 46.735840899265 2313.0 observed 1 0
DL241007 Shewanella putrefaciens 47.2222222222222 6012.0 observed 1 0
DL241008 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 0
E06745 Shewanella putrefaciens 43.9321604726611 37913.0 observed 0 0
E06746 Shewanella putrefaciens 46.2934947049924 1983.0 observed 1 1
E06747 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 0
E06748 Shewanella putrefaciens 46.3688290493676 4902.0 observed 1 1
E06749 Shewanella putrefaciens 46.9439193446755 3174.0 observed 1 1
E06750 Shewanella putrefaciens 46.7948717948718 2340.0 observed 1 1
E06751 Shewanella putrefaciens 47.50753947135 5637.0 observed 1 1
E06752 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 0
E06753 Shewanella putrefaciens 40.4135338345865 1596.0 observed 1 0
E12050 Shewanella putrefaciens 43.9530281039715 37895.0 observed 0 0
E12051 Shewanella putrefaciens 46.2934947049924 1983.0 observed 1 0
E12052 Shewanella putrefaciens 42.8399518652226 831.0 observed 1 1
E12053 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 0
E12054 Shewanella putrefaciens 45.3703703703704 864.0 observed 1 0
E12055 Shewanella putrefaciens 46.7223028543783 8268.0 observed 1 0
E12056 Shewanella putrefaciens 46.7948717948718 2340.0 observed 1 0
E12057 Shewanella putrefaciens 47.2222222222222 6012.0 observed 1 0
E12058 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 0
E12059 Shewanella putrefaciens 40.7619047619048 1575.0 observed 1 1
HV585877 Shewanella putrefaciens 43.9503892334081 37895.0 observed 0 0
HV585878 Shewanella putrefaciens 39.2567567567568 1480.0 observed 0 0
HV585881 Shewanella putrefaciens 35.4838709677419 217.0 observed 1 0
HV585882 Shewanella putrefaciens 46.5536723163842 885.0 observed 0 0
HV585883 Shewanella putrefaciens 47.4327628361858 409.0 observed 0 0
HV585935 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 1
HV585936 Shewanella putrefaciens 45.3703703703704 864.0 observed 1 1
HV585937 Shewanella putrefaciens 46.7223028543783 8268.0 observed 1 1
HV585938 Shewanella putrefaciens 46.735840899265 2313.0 observed 1 1
HV585939 Shewanella putrefaciens 47.2222222222222 6012.0 observed 1 1
HV585940 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 1
HV750573 Shewanella putrefaciens 47.4153297682709 561.0 observed 1 1
HV814748 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
HV814749 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
HW645911 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
HW645912 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
HZ405741 Shewanella putrefaciens 47.4153297682709 561.0 observed 1 0
JC186690 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
JC186691 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
JC193261 Shewanella putrefaciens 43.9503892334081 37895.0 observed 0 0
JC193264 Shewanella putrefaciens 39.2567567567568 1480.0 observed 0 0
JC193274 Shewanella putrefaciens 35.4838709677419 217.0 observed 1 0
JC193276 Shewanella putrefaciens 46.5536723163842 885.0 observed 0 0
JC193277 Shewanella putrefaciens 47.4327628361858 409.0 observed 0 0
JC193341 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 0
JC193342 Shewanella putrefaciens 45.3703703703704 864.0 observed 1 0
JC193343 Shewanella putrefaciens 46.7223028543783 8268.0 observed 1 0
JC193344 Shewanella putrefaciens 46.735840899265 2313.0 observed 1 0
JC193345 Shewanella putrefaciens 47.2222222222222 6012.0 observed 1 0
JC193346 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 0
JC197035 Shewanella putrefaciens 43.9503892334081 37895.0 observed 0 0
JC197038 Shewanella putrefaciens 39.2567567567568 1480.0 observed 0 0
JC197048 Shewanella putrefaciens 35.4838709677419 217.0 observed 1 0
JC197050 Shewanella putrefaciens 46.5536723163842 885.0 observed 0 0
JC197051 Shewanella putrefaciens 47.4327628361858 409.0 observed 0 0
JC197115 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 0
JC197116 Shewanella putrefaciens 45.3703703703704 864.0 observed 1 0
JC197117 Shewanella putrefaciens 46.7223028543783 8268.0 observed 1 0
JC197118 Shewanella putrefaciens 46.735840899265 2313.0 observed 1 0
JC197119 Shewanella putrefaciens 47.2222222222222 6012.0 observed 1 0
JC197120 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 0
JC224620 Shewanella putrefaciens 43.9503892334081 37895.0 observed 0 0
JC224623 Shewanella putrefaciens 39.2567567567568 1480.0 observed 0 0
JC224633 Shewanella putrefaciens 35.4838709677419 217.0 observed 1 0
JC224635 Shewanella putrefaciens 46.5536723163842 885.0 observed 0 0
JC224636 Shewanella putrefaciens 47.4327628361858 409.0 observed 0 0
JC224700 Shewanella putrefaciens 43.3333333333333 2910.0 observed 1 0
JC224701 Shewanella putrefaciens 45.3703703703704 864.0 observed 1 0
JC224702 Shewanella putrefaciens 46.7223028543783 8268.0 observed 1 0
JC224703 Shewanella putrefaciens 46.735840899265 2313.0 observed 1 0
JC224704 Shewanella putrefaciens 47.2222222222222 6012.0 observed 1 0
JC224705 Shewanella putrefaciens 47.8207489257213 1629.0 observed 1 0
LY404553 Shewanella putrefaciens 47.4153297682709 561.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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