home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

54 rows where Species_name = "Shewanella sp."

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS375743 Shewanella sp. 47.9759426324312 4323.0 observed 1 1
DD412107 Shewanella sp. 41.9607843137255 765.0 observed 1 1
DD412111 Shewanella sp. 42.6179604261796 657.0 observed 1 1
DJ430786 Shewanella sp. 46.8421052631579 1140.0 observed 1 0
FB505401 Shewanella sp. 48.7855297157623 1935.0 observed 1 1
FB657083 Shewanella sp. 46.8421052631579 1140.0 observed 1 0
FW590107 Shewanella sp. 40.0 40.0 observed 0 0
FW590108 Shewanella sp. 48.9247311827957 1116.0 observed 1 0
GN108208 Shewanella sp. 46.2739174219537 1986.0 observed 1 1
GN110263 Shewanella sp. 52.2522522522523 444.0 observed 1 1
GN110265 Shewanella sp. 51.5765765765766 444.0 observed 1 1
GN122761 Shewanella sp. 49.3464052287582 1224.0 observed 1 1
GN127987 Shewanella sp. 46.4401294498382 618.0 observed 1 1
GN128494 Shewanella sp. 51.6981132075472 795.0 observed 1 1
GN128496 Shewanella sp. 51.8238993710692 795.0 observed 1 1
GN129951 Shewanella sp. 49.3464052287582 1224.0 observed 1 0
HB970443 Shewanella sp. 45.531914893617 705.0 observed 1 1
HC497495 Shewanella sp. 50.3875968992248 645.0 observed 1 1
HC498287 Shewanella sp. 49.5454545454545 660.0 observed 1 1
HC498289 Shewanella sp. 49.2424242424242 660.0 observed 1 1
HC506026 Shewanella sp. 51.2947658402204 1815.0 observed 1 1
HC506028 Shewanella sp. 50.7438016528926 1815.0 observed 1 1
HC506030 Shewanella sp. 50.9090909090909 1815.0 observed 1 1
HC743614 Shewanella sp. 51.025641025641 390.0 observed 1 1
HC746148 Shewanella sp. 51.4492753623188 966.0 observed 1 1
HC748638 Shewanella sp. 46.8342644320298 1074.0 observed 1 1
HC748640 Shewanella sp. 45.9962756052142 1074.0 observed 1 1
HC748834 Shewanella sp. 49.2526158445441 1338.0 observed 1 1
HC748836 Shewanella sp. 49.626307922272 1338.0 observed 1 1
HC748838 Shewanella sp. 45.2328159645233 1353.0 observed 1 1
HC748840 Shewanella sp. 45.3806356245381 1353.0 observed 1 1
HC749138 Shewanella sp. 49.8505231689088 1338.0 observed 1 1
HC924461 Shewanella sp. 52.4227234753551 2394.0 observed 1 1
HC924463 Shewanella sp. 52.2138680033417 2394.0 observed 1 1
HC924529 Shewanella sp. 52.297410192147 2394.0 observed 1 1
HD027853 Shewanella sp. 45.531914893617 705.0 observed 1 0
HW341599 Shewanella sp. 40.0 40.0 observed 0 0
HW341600 Shewanella sp. 48.9247311827957 1116.0 observed 1 1
LP124594 Shewanella sp. 50.4317789291883 3474.0 observed 1 1
LP124595 Shewanella sp. 50.748416810593 3474.0 observed 1 1
LP125763 Shewanella sp. 51.3235294117647 2040.0 observed 1 1
LP125764 Shewanella sp. 50.9803921568627 2040.0 observed 1 1
LP126860 Shewanella sp. 54.7186147186147 3465.0 observed 1 1
LP126861 Shewanella sp. 52.8715728715729 3465.0 observed 1 0
LP129067 Shewanella sp. 45.1822916666667 768.0 observed 1 1
LP129068 Shewanella sp. 45.3125 768.0 observed 1 1
LP129999 Shewanella sp. 47.1454880294659 543.0 observed 1 1
LP130000 Shewanella sp. 47.1454880294659 543.0 observed 1 1
LQ228998 Shewanella sp. 41.5254237288136 1416.0 observed 1 0
LQ279725 Shewanella sp. 47.3684210526316 798.0 observed 1 1
LQ279726 Shewanella sp. 47.2431077694236 798.0 observed 1 1
LQ279727 Shewanella sp. 47.3684210526316 798.0 observed 1 1
LY505814 Shewanella sp. 41.5254237288136 1416.0 observed 1 0
MA765670 Shewanella sp. 41.5254237288136 1416.0 observed 1 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 6394.255ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT