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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Species_name = "Shewanella sp. sg44-6"

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These facets timed out: Is_protein_coding_sequence, Species_name

Sequence_status 1

  • predicted 15

Is_annotated 1

  • 1 15
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HJ978559 Shewanella sp. sg44-6 47.1465629053178 1542.0 predicted 1 1
HK467974 Shewanella sp. sg44-6 41.1061285500747 669.0 predicted 1 1
HK471377 Shewanella sp. sg44-6 40.8408408408408 666.0 predicted 1 1
HK471480 Shewanella sp. sg44-6 35.8288770053476 561.0 predicted 1 1
HK471671 Shewanella sp. sg44-6 33.1560283687943 564.0 predicted 1 1
HK472909 Shewanella sp. sg44-6 37.8378378378378 666.0 predicted 1 1
MM207909 Shewanella sp. sg44-6 47.0639219934995 4615.0 predicted 1 1
MM207910 Shewanella sp. sg44-6 47.2093740363861 3243.0 predicted 1 1
MM207911 Shewanella sp. sg44-6 46.3648834019204 2187.0 predicted 1 1
MM207912 Shewanella sp. sg44-6 45.3299492385787 5910.0 predicted 1 1
MM207913 Shewanella sp. sg44-6 47.3910374462861 1629.0 predicted 1 1
MM207915 Shewanella sp. sg44-6 47.1659661189657 7851.0 predicted 1 1
MM207916 Shewanella sp. sg44-6 46.5652374366067 2169.0 predicted 1 1
MM207917 Shewanella sp. sg44-6 45.2284263959391 5910.0 predicted 1 1
MM207918 Shewanella sp. sg44-6 47.206875383671 1629.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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