home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Species_name = "Sphaeroforma arctica"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 2

  • 0 6
  • 1 6
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
JA393987 Sphaeroforma arctica 44.9425287356322 870.0 observed 1 1
JA393989 Sphaeroforma arctica 47.1920289855072 1104.0 observed 1 1
JA393997 Sphaeroforma arctica 50.8692365835223 1323.0 observed 1 1
JA393999 Sphaeroforma arctica 51.5723270440252 1431.0 observed 1 1
JA394156 Sphaeroforma arctica 44.9425287356322 870.0 observed 1 0
JA394158 Sphaeroforma arctica 47.1920289855072 1104.0 observed 1 0
JA394166 Sphaeroforma arctica 50.8692365835223 1323.0 observed 1 0
JA394168 Sphaeroforma arctica 51.5723270440252 1431.0 observed 1 0
JA394198 Sphaeroforma arctica 44.8685326547922 1179.0 observed 1 1
LP720435 Sphaeroforma arctica 59.447983014862 942.0 observed 1 0
LP720437 Sphaeroforma arctica 52.1679284239504 1453.0 observed 0 0
LP720440 Sphaeroforma arctica 52.5060827250608 2055.0 observed 1 1

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 3440.1ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT