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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

9 rows where Species_name = "Sphingopyxis alaskensis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 2

  • 1 8
  • 0 1
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GN102507 Sphingopyxis alaskensis 65.8884565499351 1542.0 observed 1 1
GN122769 Sphingopyxis alaskensis 62.8899835796388 1218.0 observed 1 1
GN128502 Sphingopyxis alaskensis 64.9305555555556 864.0 observed 1 1
GN129959 Sphingopyxis alaskensis 62.8899835796388 1218.0 observed 1 0
HB438017 Sphingopyxis alaskensis 64.8717948717949 390.0 observed 1 1
HC497499 Sphingopyxis alaskensis 65.1515151515152 660.0 observed 1 1
HC498295 Sphingopyxis alaskensis 60.1164483260553 687.0 observed 1 1
HC746150 Sphingopyxis alaskensis 65.491452991453 936.0 observed 1 1
HC749148 Sphingopyxis alaskensis 66.6666666666667 1335.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 4723.452ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT