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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

22 rows where Species_name = "Symbiodinium microadriaticum"

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Species_name 1

  • Symbiodinium microadriaticum · 22 ✖

Sequence_status 1

  • observed 22

Is_protein_coding_sequence 1

  • 1 22

Is_annotated 1

  • 0 22
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HW806081 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
HZ376189 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
HZ504110 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
HZ780306 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
HZ795404 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LF947688 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LF947727 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LF951920 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LF951962 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LV542609 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LV571732 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LX063649 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LX063870 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LX077021 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LX077073 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LZ230739 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LZ238245 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LZ952040 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
LZ983289 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
MA377903 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
MA885417 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0
MB021264 Symbiodinium microadriaticum 57.6923076923077 702.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 240.32ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT