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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

911 rows where Species_name = "Synechococcus sp."

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GM966605 Synechococcus sp. 57.87728026534 603.0 observed 1 1
GN042133 Synechococcus sp. 52.3092369477912 2988.0 observed 1 1
GN042573 Synechococcus sp. 62.2739018087855 1548.0 observed 1 1
GN077366 Synechococcus sp. 61.6519174041298 339.0 observed 1 1
GN089886 Synechococcus sp. 50.5078485687904 1083.0 observed 1 1
GN095558 Synechococcus sp. 61.1464968152866 471.0 observed 1 1
GN095560 Synechococcus sp. 61.8421052631579 456.0 observed 1 1
GN095841 Synechococcus sp. 55.4357592093441 1113.0 observed 1 1
GN095843 Synechococcus sp. 55.2536231884058 1104.0 observed 1 1
GN095845 Synechococcus sp. 66.2011173184357 1074.0 observed 1 0
GN098289 Synechococcus sp. 62.5 2880.0 observed 1 0
GN102221 Synechococcus sp. 51.5840220385675 1452.0 observed 1 1
GN120165 Synechococcus sp. 58.5344057193923 1119.0 observed 1 1
GN120167 Synechococcus sp. 64.4021739130435 1104.0 observed 1 0
GN122799 Synechococcus sp. 56.691604322527 1203.0 observed 1 1
GN122801 Synechococcus sp. 61.7986798679868 1212.0 observed 1 1
GN122803 Synechococcus sp. 55.9701492537313 1206.0 observed 1 1
GN122805 Synechococcus sp. 60.4785478547855 1212.0 observed 1 1
GN125236 Synechococcus sp. 49.8644986449864 738.0 observed 1 0
GN125300 Synechococcus sp. 58.0952380952381 735.0 observed 1 1
GN125312 Synechococcus sp. 56.5625 960.0 observed 1 1
GN128522 Synechococcus sp. 59.3556381660471 807.0 observed 1 1
GN128524 Synechococcus sp. 64.4278606965174 804.0 observed 1 0
GN128526 Synechococcus sp. 63.4803921568627 816.0 observed 1 1
GN129989 Synechococcus sp. 56.691604322527 1203.0 observed 1 0
GN129991 Synechococcus sp. 61.7986798679868 1212.0 observed 1 0
GN129993 Synechococcus sp. 55.9701492537313 1206.0 observed 1 0
GN129995 Synechococcus sp. 60.4785478547855 1212.0 observed 1 0
HB438039 Synechococcus sp. 59.7964376590331 393.0 observed 1 1
HB438041 Synechococcus sp. 61.5776081424936 393.0 observed 1 1
HB438043 Synechococcus sp. 56.234096692112 393.0 observed 1 1
HB438045 Synechococcus sp. 62.086513994911 393.0 observed 1 1
HB443943 Synechococcus sp. 61.2987012987013 1155.0 observed 1 0
HB444181 Synechococcus sp. 58.1740976645435 942.0 observed 1 1
HB651119 Synechococcus sp. 51.1481481481482 2700.0 observed 0 0
HB654172 Synechococcus sp. 59.7042513863216 1623.0 observed 1 0
HB655106 Synechococcus sp. 59.2808551992225 1029.0 observed 1 0
HB655108 Synechococcus sp. 63.0952380952381 1092.0 observed 1 0
HB661722 Synechococcus sp. 59.7042513863216 1623.0 observed 1 0
HB662116 Synechococcus sp. 51.6516516516517 999.0 observed 1 0
HB665309 Synechococcus sp. 59.2808551992225 1029.0 observed 1 0
HB665311 Synechococcus sp. 63.0952380952381 1092.0 observed 1 0
HB670260 Synechococcus sp. 51.6516516516517 999.0 observed 1 0
HB678300 Synechococcus sp. 57.473420888055 1599.0 observed 1 0
HB678302 Synechococcus sp. 63.1740196078431 1632.0 observed 1 0
HB683066 Synechococcus sp. 51.6516516516517 999.0 observed 1 0
HB704463 Synechococcus sp. 57.9365079365079 378.0 observed 1 0
HB706660 Synechococcus sp. 59.2808551992225 1029.0 observed 1 0
HB706662 Synechococcus sp. 63.0952380952381 1092.0 observed 1 0
HB715343 Synechococcus sp. 57.1980676328502 1035.0 observed 1 0
HB721733 Synechococcus sp. 51.6516516516517 999.0 observed 1 0
HB738412 Synechococcus sp. 51.6516516516517 999.0 observed 1 0
HB745553 Synechococcus sp. 51.1481481481482 2700.0 observed 0 0
HB749135 Synechococcus sp. 59.2808551992225 1029.0 observed 1 0
HB749137 Synechococcus sp. 63.0952380952381 1092.0 observed 1 0
HB757502 Synechococcus sp. 51.6516516516517 999.0 observed 1 0
HB766937 Synechococcus sp. 51.1481481481482 2700.0 observed 0 0
HB817679 Synechococcus sp. 59.2808551992225 1029.0 observed 1 0
HB817681 Synechococcus sp. 63.0952380952381 1092.0 observed 1 0
HB818425 Synechococcus sp. 51.1481481481482 2700.0 observed 0 0
HB820194 Synechococcus sp. 57.9365079365079 378.0 observed 1 0
HB869827 Synechococcus sp. 62.5984251968504 1524.0 observed 1 0
HB870151 Synechococcus sp. 52.7220630372493 1047.0 observed 1 1
HB870193 Synechococcus sp. 62.145390070922 1128.0 observed 1 1
HB871011 Synechococcus sp. 60.6933333333333 1875.0 observed 1 1
HB871013 Synechococcus sp. 58.3594566353187 1914.0 observed 1 1
HB871015 Synechococcus sp. 61.525974025974 1848.0 observed 1 1
HB871287 Synechococcus sp. 59.8099117447386 1473.0 observed 1 0
HB872091 Synechococcus sp. 56.6813509544787 1362.0 observed 1 1
HB872125 Synechococcus sp. 63.1031922791388 1347.0 observed 1 1
HB872723 Synechococcus sp. 52.7220630372493 1047.0 observed 1 0
HB872765 Synechococcus sp. 62.145390070922 1128.0 observed 1 0
HB873351 Synechococcus sp. 56.6813509544787 1362.0 observed 1 0
HB873385 Synechococcus sp. 63.1031922791388 1347.0 observed 1 0
HB873847 Synechococcus sp. 52.7220630372493 1047.0 observed 1 0
HB873889 Synechococcus sp. 62.145390070922 1128.0 observed 1 0
HB874475 Synechococcus sp. 63.6122177954847 753.0 observed 1 1
HB875222 Synechococcus sp. 56.6813509544787 1362.0 observed 1 0
HB875256 Synechococcus sp. 63.1031922791388 1347.0 observed 1 0
HB875708 Synechococcus sp. 56.4599483204134 774.0 observed 1 1
HB875732 Synechococcus sp. 58.8652482269504 705.0 observed 1 1
HB875750 Synechococcus sp. 61.0441767068273 747.0 observed 1 1
HB875752 Synechococcus sp. 60.0282485875706 708.0 observed 1 0
HB876098 Synechococcus sp. 52.7220630372493 1047.0 observed 1 0
HB876140 Synechococcus sp. 62.145390070922 1128.0 observed 1 0
HB877348 Synechococcus sp. 64.9944258639911 897.0 observed 1 1
HB878154 Synechococcus sp. 56.4599483204134 774.0 observed 1 0
HB878180 Synechococcus sp. 58.8652482269504 705.0 observed 1 0
HB878192 Synechococcus sp. 60.0282485875706 708.0 observed 1 0
HB878492 Synechococcus sp. 52.7220630372493 1047.0 observed 1 0
HB878534 Synechococcus sp. 62.145390070922 1128.0 observed 1 0
HB878843 Synechococcus sp. 56.4599483204134 774.0 observed 1 0
HB878869 Synechococcus sp. 58.8652482269504 705.0 observed 1 0
HB878881 Synechococcus sp. 60.0282485875706 708.0 observed 1 0
HB879181 Synechococcus sp. 52.7220630372493 1047.0 observed 1 0
HB879223 Synechococcus sp. 62.145390070922 1128.0 observed 1 0
HB879732 Synechococcus sp. 56.6813509544787 1362.0 observed 1 0
HB879766 Synechococcus sp. 63.1031922791388 1347.0 observed 1 0
HB880228 Synechococcus sp. 52.7220630372493 1047.0 observed 1 0
HB880270 Synechococcus sp. 62.145390070922 1128.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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