Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Species_name = "Takifugu bimaculatus"

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Suggested facets: Sequence_length

Species_name 1

  • Takifugu bimaculatus · 13 ✖

Sequence_status 1

Is_protein_coding_sequence 1

  • 1 13

Is_annotated 1

  • 1 13
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GX353616 Takifugu bimaculatus 57.2289156626506 166.0 predicted 1 1
GX760150 Takifugu bimaculatus 61.8279569892473 558.0 predicted 1 1
GY151384 Takifugu bimaculatus 54.7325102880658 243.0 predicted 1 1
GY152251 Takifugu bimaculatus 54.7794117647059 272.0 predicted 1 1
HK523791 Takifugu bimaculatus 52.5993883792049 654.0 predicted 1 1
LF468080 Takifugu bimaculatus 57.8520770010132 987.0 predicted 1 1
LF503478 Takifugu bimaculatus 46.5045592705167 987.0 predicted 1 1
LF538876 Takifugu bimaculatus 55.3191489361702 987.0 predicted 1 1
LF574274 Takifugu bimaculatus 46.0992907801418 987.0 predicted 1 1
LF609672 Takifugu bimaculatus 45.5927051671732 987.0 predicted 1 1
MI495007 Takifugu bimaculatus 61.4414414414414 555.0 predicted 1 1
MI495016 Takifugu bimaculatus 62.1527777777778 576.0 predicted 1 1
MP896940 Takifugu bimaculatus 58.6894586894587 351.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );