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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

33 rows where Species_name = "Tetraodon nigroviridis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Tetraodon nigroviridis · 33 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS717340 Tetraodon nigroviridis 66.8817204301075 930.0 observed 1 0
DJ433150 Tetraodon nigroviridis 48.0225988700565 177.0 observed 1 1
DJ433151 Tetraodon nigroviridis 62.3534520191055 2303.0 observed 0 0
FB336537 Tetraodon nigroviridis 48.5436893203884 309.0 observed 1 1
FB336539 Tetraodon nigroviridis 48.314606741573 267.0 observed 1 1
FB336774 Tetraodon nigroviridis 68.1426814268143 813.0 observed 1 1
GM048048 Tetraodon nigroviridis 50.6896551724138 870.0 observed 1 1
GM675614 Tetraodon nigroviridis 50.6896551724138 870.0 observed 1 0
HB968098 Tetraodon nigroviridis 52.3255813953488 1806.0 observed 1 1
HD025508 Tetraodon nigroviridis 52.3255813953488 1806.0 observed 1 0
HH767876 Tetraodon nigroviridis 48.5436893203884 309.0 observed 1 0
HH767878 Tetraodon nigroviridis 48.314606741573 267.0 observed 1 0
HH768113 Tetraodon nigroviridis 68.1426814268143 813.0 observed 1 0
HH768619 Tetraodon nigroviridis 50.8905852417303 393.0 observed 1 1
HH768803 Tetraodon nigroviridis 55.0 900.0 observed 1 1
HH770458 Tetraodon nigroviridis 53.5846267553585 2706.0 observed 1 1
HH770526 Tetraodon nigroviridis 53.6912751677852 447.0 observed 1 1
HH770959 Tetraodon nigroviridis 49.5395948434622 543.0 observed 1 1
HH771435 Tetraodon nigroviridis 46.2610899873257 789.0 observed 1 1
JD570476 Tetraodon nigroviridis 55.345436207766 3966.0 observed 1 1
LF946369 Tetraodon nigroviridis 55.345436207766 3966.0 observed 1 0
LP013071 Tetraodon nigroviridis 55.345436207766 3966.0 observed 1 0
OF273649 Tetraodon nigroviridis 46.0252839082923 4667.0 observed 0 0
OF273654 Tetraodon nigroviridis 50.9592971131433 5577.0 observed 0 0
OF273656 Tetraodon nigroviridis 53.6201469045121 5718.0 observed 0 0
OF273739 Tetraodon nigroviridis 53.3233132932532 5988.0 observed 0 0
OF273740 Tetraodon nigroviridis 44.9188727583262 2342.0 observed 0 0
OF273741 Tetraodon nigroviridis 55.7542951282655 4249.0 observed 0 0
OF273742 Tetraodon nigroviridis 53.2307692307692 975.0 observed 1 1
OF273782 Tetraodon nigroviridis 55.3110567780494 3681.0 observed 0 0
OF274681 Tetraodon nigroviridis 55.6559846617365 3651.0 observed 0 0
OF274804 Tetraodon nigroviridis 57.4898785425101 247.0 observed 0 0
OF274927 Tetraodon nigroviridis 51.5625 128.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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