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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

20 rows where Species_name = "Thermococcus celer"

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Suggested facets: GC_content

These facets timed out: Sequence_status

Is_protein_coding_sequence 2

  • 1 18
  • 0 2

Is_annotated 2

  • 0 15
  • 1 5

Species_name 1

  • Thermococcus celer · 20 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD142763 Thermococcus celer 54.4159544159544 702.0 observed 1 0
BD142766 Thermococcus celer 54.2735042735043 702.0 observed 1 0
BD168928 Thermococcus celer 54.4159544159544 702.0 observed 1 0
BD168932 Thermococcus celer 54.2735042735043 702.0 observed 1 0
CS017619 Thermococcus celer 34.6153846153846 52.0 observed 0 0
CS017620 Thermococcus celer 54.8387096774194 31.0 observed 0 0
CS017637 Thermococcus celer 57.1078431372549 816.0 observed 1 0
CS017657 Thermococcus celer 53.1818181818182 1320.0 observed 1 1
DD259850 Thermococcus celer 60.1290322580645 2325.0 observed 1 0
DI196162 Thermococcus celer 60.1290322580645 2325.0 observed 1 0
DI196199 Thermococcus celer 60.1290322580645 2325.0 observed 1 0
GM987497 Thermococcus celer 54.4159544159544 702.0 observed 1 0
GM987501 Thermococcus celer 54.2735042735043 702.0 observed 1 0
HV189961 Thermococcus celer 54.4159544159544 702.0 observed 1 1
HV189964 Thermococcus celer 54.2735042735043 702.0 observed 1 1
HV447669 Thermococcus celer 61.3555892766818 1977.0 observed 1 1
JA239338 Thermococcus celer 60.1290322580645 2325.0 observed 1 1
JA239416 Thermococcus celer 60.1290322580645 2325.0 observed 1 0
LF634195 Thermococcus celer 64.4335511982571 1836.0 observed 1 0
MP634760 Thermococcus celer 60.1290322580645 2325.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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