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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Species_name = "Thermococcus eurythermalis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name, Sequence_length

Is_annotated 1

  • 1 13
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AR222058 Thermococcus eurythermalis 56.3402889245586 1869.0 predicted 1 1
DD408613 Thermococcus eurythermalis 56.3402889245586 1869.0 predicted 1 1
GV379511 Thermococcus eurythermalis 44.0428380187416 1494.0 predicted 1 1
GV379522 Thermococcus eurythermalis 53.1818181818182 1320.0 predicted 1 1
HK715833 Thermococcus eurythermalis 55.7251908396947 786.0 predicted 1 1
HK745938 Thermococcus eurythermalis 59.3795093795094 1386.0 predicted 1 1
HV527856 Thermococcus eurythermalis 56.3691838291381 1311.0 predicted 1 1
HV527858 Thermococcus eurythermalis 58.1235697940503 1311.0 predicted 1 1
HV527867 Thermococcus eurythermalis 57.9710144927536 1311.0 predicted 1 1
HV527875 Thermococcus eurythermalis 57.1319603356217 1311.0 predicted 1 1
HV527876 Thermococcus eurythermalis 57.4370709382151 1311.0 predicted 1 1
HV527878 Thermococcus eurythermalis 56.5217391304348 1311.0 predicted 1 1
HV527881 Thermococcus eurythermalis 57.5133485888635 1311.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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