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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

36 rows where Species_name = "Thermococcus kodakarensis kod1"

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These facets timed out: Sequence_status, Is_protein_coding_sequence

Is_annotated 2

  • 1 20
  • 0 16

Species_name 1

  • Thermococcus kodakarensis kod1 · 36 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD307031 Thermococcus kodakarensis kod1 55.2 750.0 observed 1 0
BD307032 Thermococcus kodakarensis kod1 54.5361875637105 981.0 observed 1 0
BD307033 Thermococcus kodakarensis kod1 53.3333333333333 1500.0 observed 1 0
BD307064 Thermococcus kodakarensis kod1 54.3889845094664 581.0 observed 1 1
CS302390 Thermococcus kodakarensis kod1 54.7979797979798 792.0 observed 1 1
DD403992 Thermococcus kodakarensis kod1 50.617746162486 5342.0 observed 0 0
DD403993 Thermococcus kodakarensis kod1 52.9032258064516 2325.0 observed 1 1
DI248888 Thermococcus kodakarensis kod1 52.1052631578947 1140.0 observed 1 1
DJ086350 Thermococcus kodakarensis kod1 53.8954635108481 2028.0 observed 1 1
GN108570 Thermococcus kodakarensis kod1 57.3333333333333 525.0 observed 1 1
GN109057 Thermococcus kodakarensis kod1 56.369982547993 1146.0 observed 1 1
GN126240 Thermococcus kodakarensis kod1 57.2357723577236 615.0 observed 1 1
HB443484 Thermococcus kodakarensis kod1 56.3968668407311 2298.0 observed 1 1
HB937808 Thermococcus kodakarensis kod1 51.8779342723005 426.0 observed 1 1
HB952772 Thermococcus kodakarensis kod1 56.3710499490316 981.0 observed 1 1
HB958298 Thermococcus kodakarensis kod1 54.6457607433217 1722.0 observed 1 1
HB959683 Thermococcus kodakarensis kod1 56.9258266309205 1119.0 observed 1 1
HB970000 Thermococcus kodakarensis kod1 58.6080586080586 819.0 observed 1 1
HB970377 Thermococcus kodakarensis kod1 53.6489151873767 507.0 observed 1 1
HB970379 Thermococcus kodakarensis kod1 54.690618762475 501.0 observed 1 1
HC496847 Thermococcus kodakarensis kod1 53.6195286195286 1188.0 observed 1 1
HC499548 Thermococcus kodakarensis kod1 53.6195286195286 1188.0 observed 1 0
HC745514 Thermococcus kodakarensis kod1 53.5812672176309 1452.0 observed 1 1
HC903564 Thermococcus kodakarensis kod1 56.3968668407311 2298.0 observed 1 0
HC905001 Thermococcus kodakarensis kod1 55.5555555555556 1152.0 observed 1 1
HC905971 Thermococcus kodakarensis kod1 56.3968668407311 2298.0 observed 1 0
HC909121 Thermococcus kodakarensis kod1 56.3968668407311 2298.0 observed 1 0
HC910431 Thermococcus kodakarensis kod1 55.0877192982456 570.0 observed 1 1
HC916120 Thermococcus kodakarensis kod1 56.3968668407311 2298.0 observed 1 0
HC995217 Thermococcus kodakarensis kod1 51.8779342723005 426.0 observed 1 0
HD010182 Thermococcus kodakarensis kod1 56.3710499490316 981.0 observed 1 0
HD015708 Thermococcus kodakarensis kod1 54.6457607433217 1722.0 observed 1 0
HD017093 Thermococcus kodakarensis kod1 56.9258266309205 1119.0 observed 1 0
HD027410 Thermococcus kodakarensis kod1 58.6080586080586 819.0 observed 1 0
HD027787 Thermococcus kodakarensis kod1 53.6489151873767 507.0 observed 1 0
HD027789 Thermococcus kodakarensis kod1 54.690618762475 501.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 3761.122ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT