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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

22 rows where Species_name = "Thermococcus onnurineus"

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Suggested facets: GC_content

These facets timed out: Is_annotated, Species_name

Sequence_status 1

  • observed 22

Is_protein_coding_sequence 1

  • 1 22
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI402971 Thermococcus onnurineus 55.9071729957806 948.0 observed 1 0
LF392986 Thermococcus onnurineus 55.9071729957806 948.0 observed 1 1
MB450476 Thermococcus onnurineus 56.2146892655367 708.0 observed 1 1
MB450477 Thermococcus onnurineus 54.8253404381291 1689.0 observed 1 1
MB450478 Thermococcus onnurineus 56.4356435643564 909.0 observed 1 1
MB450479 Thermococcus onnurineus 56.1306223043746 1623.0 observed 1 1
MB450480 Thermococcus onnurineus 51.8707482993197 588.0 observed 1 1
MB450481 Thermococcus onnurineus 55.2777777777778 360.0 observed 1 1
MB450482 Thermococcus onnurineus 52.7354765933446 1773.0 observed 1 1
MB450483 Thermococcus onnurineus 54.2483660130719 306.0 observed 1 1
MB450484 Thermococcus onnurineus 55.5555555555556 1449.0 observed 1 1
MB450485 Thermococcus onnurineus 54.8022598870056 354.0 observed 1 1
MB450486 Thermococcus onnurineus 54.0740740740741 675.0 observed 1 1
MB450487 Thermococcus onnurineus 51.0204081632653 441.0 observed 1 1
MB450488 Thermococcus onnurineus 53.4364261168385 582.0 observed 1 1
MB450489 Thermococcus onnurineus 55.0179211469534 558.0 observed 1 1
MB450490 Thermococcus onnurineus 59.1269841269841 252.0 observed 1 1
MB450491 Thermococcus onnurineus 57.5757575757576 528.0 observed 1 1
MB450492 Thermococcus onnurineus 38.8513513513514 888.0 observed 1 1
MB450493 Thermococcus onnurineus 51.6975308641975 648.0 observed 1 1
MB450494 Thermococcus onnurineus 57.0666666666667 750.0 observed 1 1
MB450495 Thermococcus onnurineus 54.5073375262055 477.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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