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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

27 rows where Species_name = "Trichodesmium erythraeum"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI345459 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0
DI356831 Trichodesmium erythraeum 38.676844783715 786.0 observed 1 1
DI359654 Trichodesmium erythraeum 38.676844783715 786.0 observed 1 0
DI359930 Trichodesmium erythraeum 38.676844783715 786.0 observed 1 0
DI360206 Trichodesmium erythraeum 38.676844783715 786.0 observed 1 0
DI360482 Trichodesmium erythraeum 38.676844783715 786.0 observed 1 0
GN122819 Trichodesmium erythraeum 42.2277639235245 1203.0 observed 1 1
GN128534 Trichodesmium erythraeum 38.2575757575758 792.0 observed 1 1
GN130007 Trichodesmium erythraeum 42.2277639235245 1203.0 observed 1 0
HB438067 Trichodesmium erythraeum 45.7070707070707 396.0 observed 1 1
HC508041 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0
HC508953 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0
HC509652 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0
HC743642 Trichodesmium erythraeum 38.1313131313131 396.0 observed 1 1
HC745311 Trichodesmium erythraeum 37.5262054507338 477.0 observed 1 1
HC749180 Trichodesmium erythraeum 42.108843537415 1470.0 observed 1 1
HH802817 Trichodesmium erythraeum 40.0 930.0 observed 1 1
HI546053 Trichodesmium erythraeum 41.1580594679186 1278.0 observed 0 0
HI546061 Trichodesmium erythraeum 32.8774928774929 1755.0 observed 1 0
HI546067 Trichodesmium erythraeum 39.5698924731183 930.0 observed 0 0
HV580636 Trichodesmium erythraeum 41.1580594679186 1278.0 observed 0 0
HV580640 Trichodesmium erythraeum 32.8774928774929 1755.0 observed 1 1
HV580643 Trichodesmium erythraeum 39.5698924731183 930.0 observed 0 0
HV700161 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 1
HW268050 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0
JC738406 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0
LF709848 Trichodesmium erythraeum 39.9762752075919 1686.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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