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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

35 rows where Species_name = "Uncultured marine bacterium 582"

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These facets timed out: Species_name

Sequence_status 1

  • observed 35

Is_protein_coding_sequence 1

  • 1 35

Is_annotated 1

  • 0 35
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GN124137 Uncultured marine bacterium 582 57.7994933043793 2763.0 observed 1 0
GN128754 Uncultured marine bacterium 582 57.7994933043793 2763.0 observed 1 0
HB443895 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HB869256 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HB869661 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HB876914 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HB887615 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HB894870 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HB902102 Uncultured marine bacterium 582 54.1666666666667 1752.0 observed 1 0
HB904665 Uncultured marine bacterium 582 53.6036036036036 1110.0 observed 1 0
HB913798 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HB915235 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HB916452 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HB917168 Uncultured marine bacterium 582 51.9115890083632 1674.0 observed 1 0
HB923056 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HB936686 Uncultured marine bacterium 582 54.1666666666667 1752.0 observed 1 0
HB960227 Uncultured marine bacterium 582 51.9115890083632 1674.0 observed 1 0
HB961189 Uncultured marine bacterium 582 53.6036036036036 1110.0 observed 1 0
HB968933 Uncultured marine bacterium 582 54.9356223175966 699.0 observed 1 0
HC926665 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HC927070 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HC934323 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HC945024 Uncultured marine bacterium 582 54.7619047619048 798.0 observed 1 0
HC952279 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HC959511 Uncultured marine bacterium 582 54.1666666666667 1752.0 observed 1 0
HC962074 Uncultured marine bacterium 582 53.6036036036036 1110.0 observed 1 0
HC971207 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HC972644 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HC973861 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HC974577 Uncultured marine bacterium 582 51.9115890083632 1674.0 observed 1 0
HC980465 Uncultured marine bacterium 582 47.2413793103448 870.0 observed 1 0
HC994095 Uncultured marine bacterium 582 54.1666666666667 1752.0 observed 1 0
HD017637 Uncultured marine bacterium 582 51.9115890083632 1674.0 observed 1 0
HD018599 Uncultured marine bacterium 582 53.6036036036036 1110.0 observed 1 0
HD026343 Uncultured marine bacterium 582 54.9356223175966 699.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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