home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Species_name = "Vibrio alginolyticus"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD017415 Vibrio alginolyticus 46.8181818181818 660.0 observed 1 1
FB332741 Vibrio alginolyticus 45.1388888888889 1152.0 observed 1 1
GN102531 Vibrio alginolyticus 47.9344729344729 1404.0 observed 1 1
HB880500 Vibrio alginolyticus 42.1786492374728 2295.0 observed 0 0
HB892878 Vibrio alginolyticus 42.1786492374728 2295.0 observed 0 0
HB895959 Vibrio alginolyticus 42.1786492374728 2295.0 observed 0 0
HB898103 Vibrio alginolyticus 37.5 288.0 observed 1 1
HB972135 Vibrio alginolyticus 47.7477477477478 888.0 observed 1 1
HC750865 Vibrio alginolyticus 48.0286738351254 837.0 observed 1 1
HC910275 Vibrio alginolyticus 43.4439178515008 633.0 observed 1 1
HC910311 Vibrio alginolyticus 44.2211055276382 597.0 observed 1 1
HC924541 Vibrio alginolyticus 44.0764331210191 2355.0 observed 1 1
HC937909 Vibrio alginolyticus 42.1786492374728 2295.0 observed 0 0
HC950287 Vibrio alginolyticus 42.1786492374728 2295.0 observed 0 0
HC953368 Vibrio alginolyticus 42.1786492374728 2295.0 observed 0 0
HC955512 Vibrio alginolyticus 37.5 288.0 observed 1 0
HD029545 Vibrio alginolyticus 47.7477477477478 888.0 observed 1 0
HH764080 Vibrio alginolyticus 45.1388888888889 1152.0 observed 1 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 6640.301ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT