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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

7 rows where Species_name = "Vibrio mediterranei ak1"

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These facets timed out: Is_protein_coding_sequence

Species_name 1

  • Vibrio mediterranei ak1 · 7 ✖

Sequence_status 1

  • predicted 7

Is_annotated 1

  • 1 7
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HJ398779 Vibrio mediterranei ak1 48.2269503546099 705.0 predicted 1 1
HK190264 Vibrio mediterranei ak1 46.3809523809524 1050.0 predicted 1 1
MV660335 Vibrio mediterranei ak1 42.8493746601414 3678.0 predicted 1 1
MV660909 Vibrio mediterranei ak1 41.037037037037 2700.0 predicted 1 1
MV661447 Vibrio mediterranei ak1 40.5551064403126 3711.0 predicted 1 1
MV662054 Vibrio mediterranei ak1 43.9675727229375 2097.0 predicted 1 1
MV662504 Vibrio mediterranei ak1 43.21608040201 597.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 2898.035ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT