Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

7 rows where Species_name = "Vibrio scophthalmi lmg 19158"

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Species_name 1

  • Vibrio scophthalmi lmg 19158 · 7 ✖

Sequence_status 1

Is_protein_coding_sequence 1

  • 1 7

Is_annotated 1

  • 1 7
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
MV660538 Vibrio scophthalmi lmg 19158 42.6194310252281 3726.0 predicted 1 1
MV661102 Vibrio scophthalmi lmg 19158 42.2727272727273 1980.0 predicted 1 1
MV661708 Vibrio scophthalmi lmg 19158 37.0646766169154 2814.0 predicted 1 1
MV661780 Vibrio scophthalmi lmg 19158 43.3118741058655 2796.0 predicted 1 1
MV662683 Vibrio scophthalmi lmg 19158 39.8305084745763 708.0 predicted 1 1
MV662684 Vibrio scophthalmi lmg 19158 38.0614657210402 423.0 predicted 1 1
MV662685 Vibrio scophthalmi lmg 19158 42.3076923076923 312.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );