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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Species_name = "Vibrio sp. ejy3"

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Suggested facets: GC_content, Sequence_length

These facets timed out: Is_annotated

Species_name 1

  • Vibrio sp. ejy3 · 15 ✖

Sequence_status 1

  • observed 15

Is_protein_coding_sequence 1

  • 1 15
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI438749 Vibrio sp. ejy3 44.1441441441441 1443.0 observed 1 0
DI438752 Vibrio sp. ejy3 44.811753902663 1089.0 observed 1 0
DI438753 Vibrio sp. ejy3 45.8592132505176 966.0 observed 1 0
DI438754 Vibrio sp. ejy3 44.6054750402577 621.0 observed 1 0
DI438767 Vibrio sp. ejy3 44.1441441441441 1443.0 observed 1 0
DI438770 Vibrio sp. ejy3 44.811753902663 1089.0 observed 1 0
DI438771 Vibrio sp. ejy3 45.8592132505176 966.0 observed 1 0
DI438772 Vibrio sp. ejy3 44.6054750402577 621.0 observed 1 0
DI493183 Vibrio sp. ejy3 42.0487401900041 2421.0 observed 1 0
LG145989 Vibrio sp. ejy3 42.0487401900041 2421.0 observed 1 0
LQ312129 Vibrio sp. ejy3 44.1441441441441 1443.0 observed 1 1
LQ312135 Vibrio sp. ejy3 44.811753902663 1089.0 observed 1 1
LQ312137 Vibrio sp. ejy3 45.8592132505176 966.0 observed 1 1
LQ312139 Vibrio sp. ejy3 44.6054750402577 621.0 observed 1 1
LQ483135 Vibrio sp. ejy3 42.0487401900041 2421.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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