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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

6 rows where Species_name = "Woodsholea maritima"

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Suggested facets: Sequence_length

Is_protein_coding_sequence 2

  • 0 3
  • 1 3

Species_name 1

  • Woodsholea maritima · 6 ✖

Sequence_status 1

  • observed 6

Is_annotated 1

  • 0 6
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
MP399038 Woodsholea maritima 45.6211812627291 1473.0 observed 1 0
OF278590 Woodsholea maritima 48.4199796126402 1962.0 observed 1 0
OF278591 Woodsholea maritima 46.4539007092199 282.0 observed 1 0
OF278616 Woodsholea maritima 44.4444444444444 342.0 observed 0 0
OF278649 Woodsholea maritima 44.299674267101 307.0 observed 0 0
OF278650 Woodsholea maritima 50.1628664495114 307.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 1837.886ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT