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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Species_name = "Zostera marina"

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Suggested facets: GC_content, Sequence_length

Is_protein_coding_sequence 2

  • 0 8
  • 1 7

Is_annotated 2

  • 0 11
  • 1 4

Species_name 1

  • Zostera marina · 15 ✖

Sequence_status 1

  • observed 15
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX338910 Zostera marina 39.5973154362416 1192.0 observed 0 0
AX338917 Zostera marina 39.202657807309 301.0 observed 0 0
AX338930 Zostera marina 49.4142705005325 939.0 observed 1 1
AX338936 Zostera marina 52.258064516129 1085.0 observed 1 0
AX338941 Zostera marina 52.5219298245614 912.0 observed 0 0
AX338946 Zostera marina 50.0 10.0 observed 0 0
DJ062541 Zostera marina 44.4559585492228 2895.0 observed 1 1
DM065212 Zostera marina 43.3060109289617 1464.0 observed 1 1
DM065217 Zostera marina 55.0 20.0 observed 0 0
DM065218 Zostera marina 42.8571428571428 21.0 observed 0 0
HB975110 Zostera marina 47.9076923076923 3250.0 observed 0 0
HD032520 Zostera marina 47.9076923076923 3250.0 observed 0 0
JA363889 Zostera marina 42.3268274014543 2613.0 observed 1 1
LQ450740 Zostera marina 42.3268274014543 2613.0 observed 1 0
LY998745 Zostera marina 46.6460268317853 969.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 294.149ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT