Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
104,467 rows
This data as json, CSV (advanced)
Species_name >30
- Odobenus rosmarus divergens 34,341
- Trichechus manatus latirostris 11,394
- Physeter macrocephalus 7,191
- Ciona intestinalis 4,728
- Vibrio cholerae 1,015
- Prochlorococcus marinus 795
- Synechococcus sp. 766
- Vibrio vulnificus 677
- Anabaena sp. ybs01 579
- Vibrio parahaemolyticus 560
- Shewanella oneidensis 530
- Oceanobacillus iheyensis 521
- Photobacterium profundum ss9 504
- Thermotoga maritima 497
- Photobacterium profundum 487
- Synechococcus elongatus 459
- Saccharophagus degradans 2-40 423
- Shewanella oneidensis mr-1 423
- Thermococcus sp. 2319x1 399
- Methanocaldococcus jannaschii 375
- Rhodopirellula baltica 360
- Ostreococcus tauri 357
- Idiomarina loihiensis l2tr 338
- Ruegeria pomeroyi dss-3 327
- Oceanobacillus iheyensis hte831 326
- Magnetococcus marinus 325
- Desulfotalea psychrophila lsv54 322
- Vibrio parahaemolyticus rimd 2210633 319
- Novosphingobium aromaticivorans dsm 12444 298
- Trichodesmium erythraeum ims101 292
- …
| Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
|---|---|---|---|---|---|---|
| HB679024 | Saccharophagus degradans 2-40 | 47.4509803921569 | 1785.0 | observed | 1 | 0 |
| HB679636 | Aeropyrum pernix | 53.4313725490196 | 204.0 | observed | 1 | 0 |
| HB681170 | Cymodocea nodosa | 43.4355828220859 | 2445.0 | observed | 1 | 0 |
| HB681172 | Cymodocea nodosa | 54.1774332472007 | 2322.0 | observed | 1 | 0 |
| HB682738 | Archaeoglobus fulgidus dsm 4304 | 50.6329113924051 | 711.0 | observed | 1 | 0 |
| HB682744 | Aeropyrum pernix k1 | 60.4575163398693 | 918.0 | observed | 1 | 0 |
| HB682754 | Vibrio cholerae o1 biovar el tor str. n16961 | 44.3037974683544 | 711.0 | observed | 1 | 0 |
| HB682756 | Vibrio cholerae o1 biovar el tor str. n16961 | 49.5388669301713 | 759.0 | observed | 1 | 0 |
| HB682802 | Pyrobaculum aerophilum str. im2 | 46.7787114845938 | 714.0 | observed | 1 | 0 |
| HB682818 | Shewanella oneidensis mr-1 | 49.8633879781421 | 732.0 | observed | 1 | 0 |
| HB682820 | Shewanella oneidensis mr-1 | 44.6327683615819 | 708.0 | observed | 1 | 0 |
| HB682824 | Vibrio vulnificus cmcp6 | 45.0070323488045 | 711.0 | observed | 1 | 0 |
| HB682830 | Vibrio parahaemolyticus rimd 2210633 | 45.4289732770745 | 711.0 | observed | 1 | 0 |
| HB682832 | Vibrio parahaemolyticus rimd 2210633 | 46.9635627530364 | 741.0 | observed | 1 | 0 |
| HB682874 | Vibrio vulnificus yj016 | 45.0592885375494 | 759.0 | observed | 1 | 0 |
| HB682876 | Vibrio vulnificus yj016 | 49.0118577075099 | 759.0 | observed | 1 | 0 |
| HB682956 | Ruegeria pomeroyi dss-3 | 57.9487179487179 | 780.0 | observed | 1 | 0 |
| HB682976 | Colwellia psychrerythraea 34h | 37.9943502824859 | 708.0 | observed | 1 | 0 |
| HB683026 | Novosphingobium aromaticivorans dsm 12444 | 63.4738186462324 | 783.0 | observed | 1 | 0 |
| HB683028 | Saccharophagus degradans 2-40 | 46.9503546099291 | 705.0 | observed | 1 | 0 |
| HB683038 | Crocosphaera watsonii wh 8501 | 41.8779342723005 | 1065.0 | observed | 1 | 0 |
| HB683044 | Prosthecochloris aestuarii dsm 271 | 48.3870967741936 | 1023.0 | observed | 1 | 0 |
| HB683046 | Prosthecochloris aestuarii dsm 271 | 49.8293515358362 | 879.0 | observed | 1 | 0 |
| HB683050 | Magnetococcus marinus mc-1 | 55.5217831813576 | 987.0 | observed | 1 | 0 |
| HB683056 | Ruegeria sp. tm1040 | 58.0769230769231 | 780.0 | observed | 1 | 0 |
| HB683058 | Trichodesmium erythraeum ims101 | 35.9269932756964 | 1041.0 | observed | 1 | 0 |
| HB683066 | Synechococcus sp. | 51.6516516516517 | 999.0 | observed | 1 | 0 |
| HB683393 | Colwellia psychrerythraea 34h | 49.7289972899729 | 2952.0 | observed | 1 | 0 |
| HB683887 | Bruguiera sexangula | 46.3341346153846 | 1664.0 | observed | 0 | 0 |
| HB684824 | Bruguiera gymnorhiza | 39.8943196829591 | 2271.0 | observed | 1 | 0 |
| HB686066 | Salicornia europaea | 56.5217391304348 | 276.0 | observed | 1 | 0 |
| HB686114 | Thermotoga maritima msb8 | 45.2898550724638 | 1104.0 | observed | 1 | 0 |
| HB686120 | Rhodopirellula baltica sh 1 | 54.331450094162 | 1062.0 | observed | 1 | 0 |
| HB686140 | Saccharophagus degradans 2-40 | 46.0618846694796 | 1422.0 | observed | 1 | 0 |
| HB686142 | Saccharophagus degradans 2-40 | 47.4509803921569 | 1785.0 | observed | 1 | 0 |
| HB686681 | Ruegeria pomeroyi dss-3 | 67.1691792294807 | 1791.0 | observed | 1 | 0 |
| HB686715 | Novosphingobium aromaticivorans dsm 12444 | 68.4444444444444 | 1800.0 | observed | 1 | 0 |
| HB686727 | Ruegeria sp. tm1040 | 62.8571428571428 | 1785.0 | observed | 1 | 0 |
| HB687434 | Rhodopirellula baltica sh 1 | 54.006968641115 | 861.0 | observed | 1 | 0 |
| HB687436 | Prochlorococcus marinus subsp. pastoris str. ccmp1986 | 31.3661202185792 | 915.0 | observed | 1 | 0 |
| HB687442 | Vibrio vulnificus yj016 | 47.985347985348 | 819.0 | observed | 1 | 0 |
| HB687492 | Ruegeria pomeroyi dss-3 | 69.828722002635 | 759.0 | observed | 1 | 0 |
| HB687496 | Colwellia psychrerythraea 34h | 37.7572016460905 | 972.0 | observed | 1 | 0 |
| HB687520 | Novosphingobium aromaticivorans dsm 12444 | 66.4259927797834 | 831.0 | observed | 1 | 0 |
| HB687528 | Crocosphaera watsonii wh 8501 | 35.0225225225225 | 888.0 | observed | 1 | 0 |
| HB688218 | Bruguiera gymnorhiza | 39.8943196829591 | 2271.0 | observed | 1 | 0 |
| HB689702 | Prosthecochloris aestuarii dsm 271 | 52.520325203252 | 1845.0 | observed | 1 | 0 |
| HB689899 | Thermotoga maritima msb8 | 45.2898550724638 | 1104.0 | observed | 1 | 0 |
| HB689905 | Rhodopirellula baltica sh 1 | 54.331450094162 | 1062.0 | observed | 1 | 0 |
| HB689925 | Saccharophagus degradans 2-40 | 46.0618846694796 | 1422.0 | observed | 1 | 0 |
| HB689927 | Saccharophagus degradans 2-40 | 47.4509803921569 | 1785.0 | observed | 1 | 0 |
| HB691244 | Ruegeria pomeroyi dss-3 | 67.1691792294807 | 1791.0 | observed | 1 | 0 |
| HB691278 | Novosphingobium aromaticivorans dsm 12444 | 68.4444444444444 | 1800.0 | observed | 1 | 0 |
| HB691290 | Ruegeria sp. tm1040 | 62.8571428571428 | 1785.0 | observed | 1 | 0 |
| HB693268 | Kandelia candel | 57.4181117533719 | 519.0 | observed | 1 | 0 |
| HB698458 | Rhodopirellula baltica sh 1 | 54.006968641115 | 861.0 | observed | 1 | 0 |
| HB698460 | Prochlorococcus marinus subsp. pastoris str. ccmp1986 | 31.3661202185792 | 915.0 | observed | 1 | 0 |
| HB698466 | Vibrio vulnificus yj016 | 47.985347985348 | 819.0 | observed | 1 | 0 |
| HB698516 | Ruegeria pomeroyi dss-3 | 69.828722002635 | 759.0 | observed | 1 | 0 |
| HB698520 | Colwellia psychrerythraea 34h | 37.7572016460905 | 972.0 | observed | 1 | 0 |
| HB698544 | Novosphingobium aromaticivorans dsm 12444 | 66.4259927797834 | 831.0 | observed | 1 | 0 |
| HB698552 | Crocosphaera watsonii wh 8501 | 35.0225225225225 | 888.0 | observed | 1 | 0 |
| HB698986 | Avicennia marina | 50.8451656524679 | 1479.0 | observed | 1 | 0 |
| HB699166 | Bruguiera gymnorhiza | 39.8943196829591 | 2271.0 | observed | 1 | 0 |
| HB700866 | Ruegeria pomeroyi dss-3 | 67.1691792294807 | 1791.0 | observed | 1 | 0 |
| HB700900 | Novosphingobium aromaticivorans dsm 12444 | 68.4444444444444 | 1800.0 | observed | 1 | 0 |
| HB700912 | Ruegeria sp. tm1040 | 62.8571428571428 | 1785.0 | observed | 1 | 0 |
| HB701978 | Ostreococcus tauri | 55.5555555555556 | 504.0 | observed | 1 | 0 |
| HB702247 | Prochlorococcus marinus subsp. marinus str. ccmp1375 | 40.6768837803321 | 1566.0 | observed | 1 | 0 |
| HB702249 | Prochlorococcus marinus subsp. pastoris str. ccmp1986 | 32.2097378277154 | 1602.0 | observed | 1 | 0 |
| HB702251 | Prochlorococcus marinus str. mit 9313 | 55.278310940499 | 1563.0 | observed | 1 | 0 |
| HB702255 | Synechococcus elongatus pcc 6301 | 56.039603960396 | 1515.0 | observed | 1 | 0 |
| HB702257 | Prochlorococcus marinus str. natl2a | 36.6602687140115 | 1563.0 | observed | 1 | 0 |
| HB702261 | Synechococcus sp. cc9605 | 62.2992935131663 | 1557.0 | observed | 1 | 0 |
| HB702263 | Prochlorococcus marinus str. mit 9312 | 33.5922330097087 | 1545.0 | observed | 1 | 0 |
| HB702265 | Synechococcus elongatus pcc 7942 = fachb-805 | 56.1056105610561 | 1515.0 | observed | 1 | 0 |
| HB702269 | Crocosphaera watsonii wh 8501 | 40.1709401709402 | 1521.0 | observed | 1 | 0 |
| HB702271 | Trichodesmium erythraeum ims101 | 34.396497811132 | 1599.0 | observed | 1 | 0 |
| HB702354 | Bruguiera gymnorhiza | 39.8943196829591 | 2271.0 | observed | 1 | 0 |
| HB702592 | Methanococcus maripaludis s2 | 38.9803921568627 | 1275.0 | observed | 1 | 0 |
| HB702606 | Prosthecochloris aestuarii dsm 271 | 51.8860662047729 | 1299.0 | observed | 1 | 0 |
| HB702608 | Trichodesmium erythraeum ims101 | 39.2424242424242 | 1320.0 | observed | 1 | 0 |
| HB702610 | Methanosarcina acetivorans | 52.8627450980392 | 1275.0 | observed | 1 | 0 |
| HB702612 | Methanopyrus kandleri | 63.1662688941925 | 1257.0 | observed | 1 | 0 |
| HB702616 | Pyrococcus abyssi | 45.9905660377358 | 1272.0 | observed | 1 | 0 |
| HB702618 | Pyrococcus furiosus | 45.1764705882353 | 1275.0 | observed | 1 | 0 |
| HB702622 | Methanosarcina acetivorans | 50.6730007917656 | 1263.0 | observed | 1 | 0 |
| HB702624 | Methanocaldococcus jannaschii | 38.3529411764706 | 1275.0 | observed | 1 | 0 |
| HB702885 | Bruguiera gymnorhiza | 39.8943196829591 | 2271.0 | observed | 1 | 0 |
| HB703544 | Prosthecochloris aestuarii dsm 271 | 44.7971781305115 | 567.0 | observed | 1 | 0 |
| HB704148 | Rhodopirellula baltica sh 1 | 54.006968641115 | 861.0 | observed | 1 | 0 |
| HB704150 | Prochlorococcus marinus subsp. pastoris str. ccmp1986 | 31.3661202185792 | 915.0 | observed | 1 | 0 |
| HB704156 | Vibrio vulnificus yj016 | 47.985347985348 | 819.0 | observed | 1 | 0 |
| HB704206 | Ruegeria pomeroyi dss-3 | 69.828722002635 | 759.0 | observed | 1 | 0 |
| HB704210 | Colwellia psychrerythraea 34h | 37.7572016460905 | 972.0 | observed | 1 | 0 |
| HB704234 | Novosphingobium aromaticivorans dsm 12444 | 66.4259927797834 | 831.0 | observed | 1 | 0 |
| HB704242 | Crocosphaera watsonii wh 8501 | 35.0225225225225 | 888.0 | observed | 1 | 0 |
| HB704399 | Prochlorococcus marinus subsp. marinus str. ccmp1375 | 44.1666666666667 | 360.0 | observed | 1 | 0 |
| HB704401 | Prochlorococcus marinus subsp. pastoris str. ccmp1986 | 37.8917378917379 | 351.0 | observed | 1 | 0 |
| HB704403 | Prochlorococcus marinus str. mit 9313 | 47.7777777777778 | 360.0 | observed | 1 | 0 |
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CREATE TABLE Marine_Sequences (
Sequence_accession_number TEXT PRIMARY KEY,
Species_name TEXT,
GC_content TEXT,
Sequence_length TEXT,
Sequence_status TEXT,
Is_protein_coding_sequence INTEGER,
Is_annotated INTEGER,
FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
);