Marine_Sequences_Protein_Annotations
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases, linking to the Marine Sequences table (Primary Key). Searchable
- f_header
- Header of the most similar protein entry in the reference dataset
- sseqid
- Sequence ID of the similar protein entry
- stitle
- Title of the similar protein entry
- pident
- Percentage of identical matches
- evalue
- E-value of the alignment
- qcovs
- Query coverage of the alignment
- annotation_source
- Source of the annotation (sp for Swiss-Prot; tr for TrEMBL)
1 row where Sequence_accession_number = "CS798944"
This data as json, CSV (advanced)
Sequence_accession_number ▼ | f_header | sseqid | stitle | pident | evalue | qcovs | annotation_source |
---|---|---|---|---|---|---|---|
CS798944 | 9671206_entacmaea | tr|H3JQU7|H3JQU7_ENTQU | tr|H3JQU7|H3JQU7_ENTQU Red fluorescent protein eqFP578 OS=Entacmaea quadricolor OX=6118 PE=1 SV=1 | 99.1 | 8.75e-172 | 99.6 | tr |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE Marine_Sequences_Protein_Annotations ( Sequence_accession_number TEXT PRIMARY KEY, f_header TEXT, sseqid TEXT, stitle TEXT, pident TEXT, evalue TEXT, qcovs TEXT, annotation_source TEXT, FOREIGN KEY (Sequence_accession_number) REFERENCES Marine_Sequences (Sequence_accession_number) );