Marine_Sequences_Protein_Annotations

Contains annotations for protein-coding sequences, providing insights into the function and characteristics of the proteins encoded by the sequences.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases, linking to the Marine Sequences table (Primary Key). Searchable
f_header
Header of the most similar protein entry in the reference dataset
sseqid
Sequence ID of the similar protein entry
stitle
Title of the similar protein entry
pident
Percentage of identical matches
evalue
E-value of the alignment
qcovs
Query coverage of the alignment
annotation_source
Source of the annotation (sp for Swiss-Prot; tr for TrEMBL)

1 row where Sequence_accession_number = "HC910315"

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Sequence_accession_number ▼ f_header sseqid stitle pident evalue qcovs annotation_source
HC910315 51739113_vibrio sp|A5F5Y5|NQRE_VIBC3 sp|A5F5Y5|NQRE_VIBC3 Na(+)-translocating NADH-quinone reductase subunit E OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=nqrE PE=1 SV=1 100.0 1.49e-133 99.5 sp

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CREATE TABLE Marine_Sequences_Protein_Annotations (
        Sequence_accession_number TEXT PRIMARY KEY,
        f_header TEXT,
        sseqid TEXT,
        stitle TEXT,
        pident TEXT,
        evalue TEXT,
        qcovs TEXT,
        annotation_source TEXT,
        FOREIGN KEY (Sequence_accession_number) REFERENCES Marine_Sequences (Sequence_accession_number)
    );