Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

400 rows where Deep_sea_source = 0, Domain = "Bacteria" and Is_deep_sea = 0

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Suggested facets: Taxonomic_source, is_ABNJ_present

Is_ABNJ_present 3

Is_deep_sea 1

Domain 1

  • Bacteria · 400 ✖
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Acaryochloris Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Acaryochloris marina Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Acaryochloris marina mbic11017 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Aeromonas molluscorum 848 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Aeromonas salmonicida Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Aeromonas salmonicida subsp. salmonicida Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Aeromonas salmonicida subsp. salmonicida a449 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Agarivorans albus Bacteria Proteobacteria WoRMS 0 0 YES
Alcanivorax borkumensis Bacteria Proteobacteria WoRMS 0 0 YES
Alcanivorax borkumensis sk2 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Alcanivorax hongdengensis Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Alcanivorax jadensis Bacteria Proteobacteria WoRMS 0 0 YES
Algibacter lectus Bacteria Bacteroidetes WoRMS 0 0 NO
Aliivibrio fischeri Bacteria Proteobacteria WoRMS 0 0 YES
Aliivibrio fischeri es114 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Aliivibrio salmonicida Bacteria Proteobacteria WoRMS 0 0 YES
Aliivibrio salmonicida lfi1238 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Aliivibrio wodanis Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Alteromonas macleodii atcc 27126 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Alteromonas sp. gnum-1 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Anabaena cylindrica pcc 7122 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Anabaena laxa Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Aquimarina macrocephali Bacteria Bacteroidetes WoRMS 0 0 UNKNOWN
Arthrospira platensis Bacteria Cyanobacteria Wikipedia 0 0 NO
Arthrospira platensis fachb-341 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Arthrospira platensis nies-39 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Aurantimonas manganoxydans Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Aurantimonas manganoxydans si85-9a1 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Aureispira marina Bacteria Bacteroidetes WoRMS 0 0 UNKNOWN
Belliella Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Bermanella marisrubri Bacteria Proteobacteria WoRMS 0 0 YES
Blastopirellula marina Bacteria Planctomycetes WoRMS 0 0 YES
Blastopirellula marina dsm 3645 Bacteria Planctomycetota Wikipedia 0 0 UNKNOWN
Calothrix sp. Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Candidatus endobugula sertula Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Candidatus pelagibacter Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Candidatus pelagibacter ubique Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Cellulophaga Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Cellulophaga lytica Bacteria Bacteroidetes WoRMS 0 0 YES
Chimaera sp. Bacteria Actinomycetota Wikipedia 0 0 UNKNOWN
Chlorobium phaeobacteroides Bacteria Chlorobiota Wikipedia 0 0 UNKNOWN
Chlorobium phaeobacteroides bs1 Bacteria Chlorobiota Wikipedia 0 0 UNKNOWN
Chloroherpeton thalassium Bacteria Chlorobi WoRMS 0 0 YES
Chloroherpeton thalassium atcc 35110 Bacteria Chlorobi NCBI 0 0 UNKNOWN
Coleofasciculus chthonoplastes Bacteria Cyanobacteria NCBI 0 0 NO
Coleofasciculus chthonoplastes pcc 7420 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Colwellia psychrerythraea Bacteria Proteobacteria WoRMS 0 0 YES
Colwellia psychrerythraea 34h Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Congregibacter litoralis Bacteria Proteobacteria WoRMS 0 0 NO
Congregibacter litoralis kt71 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Croceibacter atlanticus Bacteria Bacteroidetes WoRMS 0 0 YES
Croceibacter atlanticus htcc2559 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Crocosphaera chwakensis ccy0110 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Crocosphaera watsonii Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Crocosphaera watsonii wh 8501 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Curtobacterium oceanosedimentum Bacteria Actinobacteria WoRMS 0 0 UNKNOWN
Cyanobium sp. pcc 7001 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Cyanothece Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Cyanothece sp. pcc 7425 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Denitrovibrio acetiphilus Bacteria Deferribacteres WoRMS 0 0 UNKNOWN
Denitrovibrio acetiphilus dsm 12809 Bacteria Deferribacterota Wikipedia 0 0 UNKNOWN
Desulfobacter curvatus Bacteria Thermodesulfobacteriota Wikipedia 0 0 UNKNOWN
Desulfobacula toluolica Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Desulfomicrobium baculatum Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfomicrobium baculatum dsm 4028 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfospira joergensenii Bacteria Proteobacteria WoRMS 0 0 YES
Desulfotalea psychrophila Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Desulfotalea psychrophila lsv54 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Dethiosulfovibrio peptidovorans Bacteria Synergistetes WoRMS 0 0 UNKNOWN
Dinoroseobacter shibae Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Dinoroseobacter shibae dfl 12 = dsm 16493 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Dokdonia sp. med134 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Ectothiorhodospira Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Erythrobacter litoralis Bacteria Proteobacteria WoRMS 0 0 YES
Erythrobacter litoralis htcc2594 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Erythrobacter sp. nap1 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Erythrobacter sp. sd-21 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Ferrimonas balearica Bacteria Proteobacteria WoRMS 0 0 YES
Fibrella aestuarina Bacteria Bacteroidetes WoRMS 0 0 UNKNOWN
Flavobacteria bacterium bbfl7 Bacteria Bacteroidota NCBI 0 0 UNKNOWN
Flavobacteriales Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Flavobacteriales bacterium alc-1 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Flavobacterium frigidarium Bacteria Bacteroidetes WoRMS 0 0 NO
Fulvimarina pelagi Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Gamma proteobacterium 'hot 75m4' Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Gamma proteobacterium htcc2207 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Gammaproteobacteria bacterium Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Glaciecola punicea Bacteria Proteobacteria WoRMS 0 0 NO
Gramella forsetii Bacteria Bacteroidetes WoRMS 0 0 UNKNOWN
Gramella forsetii kt0803 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Hahella chejuensis Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hahella chejuensis kctc 2396 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Haliangium ochraceum Bacteria Proteobacteria WoRMS 0 0 YES
Halomonas aquamarina Bacteria Proteobacteria WoRMS 0 0 YES
Hippea maritima Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hoeflea phototrophica Bacteria Proteobacteria WoRMS 0 0 NO
Hydrogenovibrio marinus Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hyphomonas neptunium Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hyphomonas neptunium atcc 15444 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Jannaschia Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );