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Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

27 rows where Domain = "Archaea" and Taxonomic_source = "NCBI"

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Suggested facets: Deep_sea_source

Phylum 4

  • Euryarchaeota 24
  • Candidatus Thermoplasmatota 1
  • Nitrososphaerota 1
  • Thermoproteota 1

Is_deep_sea 2

  • 1 23
  • 0 4

Is_ABNJ_present 1

  • UNKNOWN 27

Domain 1

  • Archaea · 27 ✖
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Aeropyrum camini sy1 = jcm 12091 Archaea Thermoproteota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2675903482 UNKNOWN
Candidatus nitrosopumilus koreensis ar1 Archaea Nitrososphaerota NCBI 0   UNKNOWN
Haloferax mediterranei Archaea Euryarchaeota NCBI 0 0 UNKNOWN
Methanocaldococcus sp. Archaea Euryarchaeota NCBI 1 https://doi.org/10.1126/science.1134772 UNKNOWN
Methanocaldococcus villosus kin24-t80 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.023663-0 UNKNOWN
Methanotorris formicicus mc-s-70 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.02887-0 UNKNOWN
Thermococcus Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus celer vu 13 = jcm 8558 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1128/genomea.00037-18 UNKNOWN
Thermococcus eurythermalis Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.067942-0 UNKNOWN
Thermococcus gorgonariusorganism Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/00207713-48-1-23 UNKNOWN
Thermococcus guaymasensis dsm 11113 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/00207713-48-4-1181 UNKNOWN
Thermococcus nautili Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.060376-0 UNKNOWN
Thermococcus onnurineus na1 Archaea Euryarchaeota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=643348580 UNKNOWN
Thermococcus piezophilus Archaea Euryarchaeota NCBI 1 https://doi.org/10.1016/j.syapm.2016.08.003 UNKNOWN
Thermococcus sp. Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. 2319x1 Archaea Euryarchaeota NCBI 0   UNKNOWN
Thermococcus sp. b1001 Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. es12 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organisms?id=Go0572421 UNKNOWN
Thermococcus sp. gr4 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. gr5 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. gr6 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. gr7 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. jcm 11816 Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. jdf-3 Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. ls1 Archaea Euryarchaeota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=3002681924 UNKNOWN
Thermococcus sp. mv11 Archaea Euryarchaeota NCBI 1 https://cedar.wwu.edu/wwuet/926 UNKNOWN
Uncultured marine group ii euryarchaeote 37f11 Archaea Candidatus Thermoplasmatota NCBI 0 0 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );
Powered by Datasette · Queries took 10.09ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT