Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

285 rows where Domain = "Bacteria", Is_ABNJ_present = "UNKNOWN" and Taxonomic_source = "NCBI"

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Suggested facets: Deep_sea_source

Is_deep_sea 2

  • 0 259
  • 1 24

Is_ABNJ_present 1

  • UNKNOWN · 285 ✖

Domain 1

  • Bacteria · 285 ✖
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Aeromicrobium marinum dsm 15272 Bacteria Actynomycetota NCBI 0   UNKNOWN
Algibacter aquaticus Bacteria Bacteroidota NCBI 0   UNKNOWN
Algibacter marinivivus Bacteria Bacteroidota NCBI 0   UNKNOWN
Alvinella pompejana epibiont 6c6 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Bacillus altitudinis Bacteria Bacillota NCBI 0   UNKNOWN
Bacillus tropicus Bacteria Bacillota NCBI 0   UNKNOWN
Bacillus xiamenensis Bacteria Bacillota NCBI 0   UNKNOWN
Caldithrix abyssi dsm 13497 Bacteria Calditrichota NCBI 1 WoRDSS UNKNOWN
Caldithrix sp Bacteria Calditrichota NCBI 0   UNKNOWN
Calditrix abyssi Bacteria Calditrichaeota NCBI 1 https://doi.org/10.1099/ijs.0.02390-0 UNKNOWN
Candidatus endobugula sertula Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Candidatus pelagibacter ubique Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Candidatus sulfurimonas baltica Bacteria Campylobacterota NCBI 0   UNKNOWN
Candidatus sulfurimonas marisnigri Bacteria Campylobacterota NCBI 0   UNKNOWN
Cellulophaga omnivescoria Bacteria Bacteroidota NCBI 0   UNKNOWN
Chloroherpeton thalassium atcc 35110 Bacteria Chlorobi NCBI 0 0 UNKNOWN
Chryseobacterium aquaticum subsp. greenlandense Bacteria Bacteroidota NCBI 0   UNKNOWN
Coccolithus braarudii Bacteria Pseudomonadota NCBI 0   UNKNOWN
Coleofasciculus chthonoplastes pcc 7420 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Colwellia maris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Crocosphaera chwakensis ccy0110 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Crocosphaera subtropica Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanobium sp. med843 Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanobium sp. pcc 7001 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Cyanobium sp. rs427 Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanothece sp. Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Desulfomicrobium baculatum Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfomicrobium baculatum dsm 4028 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfotalea psychrophila lsv54 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Dethiosulfovibrio peptidovorans dsm 11002 Bacteria Synergistota NCBI 0   UNKNOWN
Dokdonia donghaensis dsw-1 Bacteria Bacteroidota NCBI 0   UNKNOWN
Ectothiorhodospira sp. phs-1 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Flavivirga rizhaonensis Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteria bacterium bbfl7 Bacteria Bacteroidota NCBI 0 0 UNKNOWN
Flavobacteriaceae bacterium Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteriales bacterium Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteriales bacterium brh_c54 Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium aquatile Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium branchiophilum Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium crassostreae Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium psychrophilum Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium sp. tab 87 Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium sp. umi-01 Bacteria Bacteroidota NCBI 0   UNKNOWN
Fulvimarina pelagi htcc2506 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Fulvimarina sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Glaciecola punicea acam 611 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Halomonas maris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Halomonas sp. htnk1 Bacteria Pseudomonadota NCBI     UNKNOWN
Hoeflea sp. ec-hk425 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN
Hyphomonas pacifica Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-016-0712-7 UNKNOWN
Hyphomonas polymorpha ps728 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Kordia sp. tara_039_srf Bacteria Bacteroidota NCBI 0   UNKNOWN
Lysobacter maris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Maribacter hydrothermalis Bacteria Bacteroidota NCBI 1 https://doi.org/10.1007/s00284-021-02519-4 UNKNOWN
Marinactinospora thermotolerans dsm 45154 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1099/ijs.0.005231-0 UNKNOWN
Marine actinobacteria clade Bacteria Actinobacteria NCBI 0 0 UNKNOWN
Marine actinobacterium Bacteria Actinobacteria NCBI 0 0 UNKNOWN
Marine actinobacterium phsc20c1 Bacteria Actinobacteria NCBI 0 0 UNKNOWN
Marinobacter confluentis Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter fuscus Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter manganoxydans mni7-9 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Marinobacter nauticus Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter salarius Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter salinexigens Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1099/ijsem.0.004236 UNKNOWN
Marinobacter santoriniensis nksg1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2545824694 UNKNOWN
Marinobacter sp. ac-23 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2855226351 UNKNOWN
Marinobacter sp. b9-2 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter sp. bw6 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter sp. c18 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter sp. cp1 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter sp. dsm 26671 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter sp. en3 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter sp. t13-3 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter vinifirmus Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinobacter vulgaris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinomonas gallaica Bacteria Pseudomonadota NCBI     UNKNOWN
Marinomonas profundimaris Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Marinomonas sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinomonas sp. Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinomonas sp. c1424 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinomonas spartinae Bacteria Pseudomonadota NCBI 0   UNKNOWN
Marinomonas ushuaiensis dsm 15871 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Maritimibacter sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Methylophaga aminisulfidivorans mp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Methylophaga frappieri Bacteria Pseudomonadota NCBI 0   UNKNOWN
Methylophaga nitratireducenticrescens Bacteria Pseudomonadota NCBI 0   UNKNOWN
Methylophaga thiooxydans dms010 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Microscilla marina atcc 23134 Bacteria Bacteroidota NCBI 0   UNKNOWN
Microscilla sp. pre1 Bacteria Bacteroidota NCBI 0   UNKNOWN
Moritella sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Moritella sp. Bacteria Pseudomonadota NCBI 0   UNKNOWN
Moritella sp. pe36 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Moritella viscosa Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Neptuniibacter sp. phe_28 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Nitratireductor aestuarii Bacteria Pseudomonadota NCBI 0   UNKNOWN
Nitratireductor indicus c115 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0025194 UNKNOWN
Nitratireductor sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Nitratireductor sp. stc3 Bacteria Pseudomonadota NCBI 0   UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );