Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

902 rows where Domain = "Bacteria"

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Is_ABNJ_present 3

Is_deep_sea 2

  • 0 702
  • 1 84

Domain 1

  • Bacteria · 788 ✖
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Congregibacter litoralis kt71 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Croceibacter atlanticus Bacteria Bacteroidetes WoRMS 0 0 YES
Croceibacter atlanticus htcc2559 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Crocosphaera chwakensis ccy0110 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Crocosphaera subtropica Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Crocosphaera watsonii Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Crocosphaera watsonii wh 8501 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Curtobacterium oceanosedimentum Bacteria Actinobacteria WoRMS 0 0 UNKNOWN
Cyanobium sp. med843 Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanobium sp. pcc 7001 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Cyanobium sp. rs427 Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanothece Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Cyanothece sp. Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanothece sp. pcc 7425 Bacteria Cyanobacteria Wikipedia 0 0 UNKNOWN
Denitrovibrio acetiphilus Bacteria Deferribacteres WoRMS 0 0 UNKNOWN
Denitrovibrio acetiphilus dsm 12809 Bacteria Deferribacterota Wikipedia 0 0 UNKNOWN
Desulfobacter curvatus Bacteria Thermodesulfobacteriota Wikipedia 0 0 UNKNOWN
Desulfobacula phenolica Bacteria Proteobacteria WoRMS 0   UNKNOWN
Desulfobacula toluolica Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Desulfomicrobium baculatum Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfomicrobium baculatum dsm 4028 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfospira joergensenii Bacteria Proteobacteria WoRMS 0 0 YES
Desulfotalea psychrophila Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Desulfotalea psychrophila lsv54 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Dethiosulfovibrio peptidovorans Bacteria Synergistetes WoRMS 0 0 UNKNOWN
Dethiosulfovibrio peptidovorans dsm 11002 Bacteria Synergistota NCBI 0   UNKNOWN
Dinoroseobacter shibae Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Dinoroseobacter shibae dfl 12 = dsm 16493 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Dokdonia donghaensis dsw-1 Bacteria Bacteroidota NCBI 0   UNKNOWN
Dokdonia sp. med134 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Ectothiorhodospira Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Ectothiorhodospira sp. phs-1 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Erythrobacter litoralis Bacteria Proteobacteria WoRMS 0 0 YES
Erythrobacter litoralis htcc2594 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Erythrobacter longus Bacteria Proteobacteria WoRMS 0   YES
Erythrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijsem.0.003136 UNKNOWN
Erythrobacter sp. nap1 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Erythrobacter sp. sd-21 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Ferrimonas balearica Bacteria Proteobacteria WoRMS 0 0 YES
Fibrella aestuarina Bacteria Bacteroidetes WoRMS 0 0 UNKNOWN
Flavivirga rizhaonensis Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteria bacterium bbfl7 Bacteria Bacteroidota NCBI 0 0 UNKNOWN
Flavobacteriaceae bacterium Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteriales Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Flavobacteriales bacterium Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteriales bacterium alc-1 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Flavobacteriales bacterium brh_c54 Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium aquatile Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium branchiophilum Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium crassostreae Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium frigidarium Bacteria Bacteroidetes WoRMS 0 0 NO
Flavobacterium frigidimaris Bacteria Bacteroidetes WoRMS 0   UNKNOWN
Flavobacterium psychrophilum Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium sp. tab 87 Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium sp. umi-01 Bacteria Bacteroidota NCBI 0   UNKNOWN
Fulvimarina pelagi Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Fulvimarina pelagi htcc2506 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Fulvimarina sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Gamma proteobacterium 'hot 75m4' Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Gamma proteobacterium htcc2207 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Gammaproteobacteria Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Gammaproteobacteria bacterium Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Gelidibacter salicanalis Bacteria Bacteroidetes WoRMS 0   UNKNOWN
Geobacillus kaustophilus Bacteria Firmicutes WoRMS 1 2018 UNKNOWN
Geobacillus kaustophilus hta426 Bacteria Bacillota Wikipedia 1 2018 UNKNOWN
Glaciecola punicea Bacteria Proteobacteria WoRMS 0 0 NO
Glaciecola punicea acam 611 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Gramella forsetii Bacteria Bacteroidetes WoRMS 0 0 UNKNOWN
Gramella forsetii kt0803 Bacteria Bacteroidota Wikipedia 0 0 UNKNOWN
Hahella chejuensis Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hahella chejuensis kctc 2396 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Haliangium ochraceum Bacteria Proteobacteria WoRMS 0 0 YES
Halomonas aquamarina Bacteria Proteobacteria WoRMS 0 0 YES
Halomonas axialensis Bacteria Proteobacteria WoRMS 0   YES
Halomonas cupida Bacteria Proteobacteria WoRMS 0   YES
Halomonas maris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Halomonas sp. htnk1 Bacteria Pseudomonadota NCBI     UNKNOWN
Halomonas titanicae Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.020628-0 UNKNOWN
Hippea maritima Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hoeflea phototrophica Bacteria Proteobacteria WoRMS 0 0 NO
Hoeflea sp. ec-hk425 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Hydrogenovibrio crunogenus Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/jb.187.16.5761-5766.2005 UNKNOWN
Hydrogenovibrio marinus Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas adhaerens Bacteria Proteobacteria WoRMS 0   UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN
Hyphomonas neptunium Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Hyphomonas neptunium atcc 15444 Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Hyphomonas pacifica Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-016-0712-7 UNKNOWN
Hyphomonas polymorpha ps728 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Idiomarina loihiensis Bacteria Proteobacteria WoRMS 1 2018 YES
Idiomarina loihiensis l2tr Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Idiomarina sp Bacteria Pseudomonadota Wikipedia 0   UNKNOWN
Idiomarina sp. Bacteria Pseudomonadota Wikipedia 0   UNKNOWN
Idiomarina sp. h2 Bacteria Pseudomonadota Wikipedia 0   UNKNOWN
Idiomarina sp. md25a Bacteria Pseudomonadota Wikipedia 0   UNKNOWN
Idiomarina zobellii Bacteria Proteobacteria WoRMS 0   YES
Jannaschia Bacteria Pseudomonadota Wikipedia 0 0 UNKNOWN
Jannaschia donghaensis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Jannaschia rubra Bacteria Proteobacteria WoRMS 0   UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );