Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

431 rows where Is_ABNJ_present = "UNKNOWN" and Taxonomic_source = "NCBI"

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Domain 4

Is_deep_sea 2

  • 0 381
  • 1 47

Is_ABNJ_present 1

  • UNKNOWN · 431 ✖
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Acropora Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Aequorea Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Aeromicrobium marinum dsm 15272 Bacteria Actynomycetota NCBI 0   UNKNOWN
Aeropyrum camini sy1 = jcm 12091 Archaea Thermoproteota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2675903482 UNKNOWN
Algibacter aquaticus Bacteria Bacteroidota NCBI 0   UNKNOWN
Algibacter marinivivus Bacteria Bacteroidota NCBI 0   UNKNOWN
Alvikia littoralis Eukaryota Chlorophyta NCBI 0 0 UNKNOWN
Alvinella pompejana epibiont 6c6 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Anemonia Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Anthoathecata Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Anthopleura Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Anthozoa Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Aplysia Eukaryota Mollusca NCBI 0 0 UNKNOWN
Artemia franciscana Eukaryota Arthropoda NCBI 0 0 UNKNOWN
Ascidia sydneiensis samea Eukaryota Chordata NCBI 0 0 UNKNOWN
Bacillus altitudinis Bacteria Bacillota NCBI 0   UNKNOWN
Bacillus tropicus Bacteria Bacillota NCBI 0   UNKNOWN
Bacillus xiamenensis Bacteria Bacillota NCBI 0   UNKNOWN
Balaenoptera acutorostrata scammoni Eukaryota Chordata NCBI 0 0 UNKNOWN
Branchiostoma belcheri tsingtauense Eukaryota Chordata NCBI 0 0 UNKNOWN
Bruguiera x rhynchopetala Eukaryota Streptophyta NCBI 0   UNKNOWN
Caldithrix abyssi dsm 13497 Bacteria Calditrichota NCBI 1 WoRDSS UNKNOWN
Caldithrix sp Bacteria Calditrichota NCBI 0   UNKNOWN
Calditrix abyssi Bacteria Calditrichaeota NCBI 1 https://doi.org/10.1099/ijs.0.02390-0 UNKNOWN
Candidatus endobugula sertula Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Candidatus nitrosopumilus koreensis ar1 Archaea Nitrososphaerota NCBI 0   UNKNOWN
Candidatus pelagibacter ubique Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Candidatus sulfurimonas baltica Bacteria Campylobacterota NCBI 0   UNKNOWN
Candidatus sulfurimonas marisnigri Bacteria Campylobacterota NCBI 0   UNKNOWN
Carybdea alata Eukaryota Cnidaria NCBI 0   UNKNOWN
Cellulophaga omnivescoria Bacteria Bacteroidota NCBI 0   UNKNOWN
Chlamys nipponensis akazara Eukaryota Mollusca NCBI 0   UNKNOWN
Chlorarachnion Eukaryota Cercozoa NCBI 0 0 UNKNOWN
Chloroherpeton thalassium atcc 35110 Bacteria Chlorobi NCBI 0 0 UNKNOWN
Chloromonas sp. knf032 Eukaryota Chlorophyta NCBI 0 0 UNKNOWN
Chryseobacterium aquaticum subsp. greenlandense Bacteria Bacteroidota NCBI 0   UNKNOWN
Clavularia sp. Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Coccolithus braarudii Bacteria Pseudomonadota NCBI 0   UNKNOWN
Coleofasciculus chthonoplastes pcc 7420 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Colwellia maris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Crocosphaera chwakensis ccy0110 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Crocosphaera subtropica Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cryptopygus antarcticus Eukaryota Arthropoda NCBI 0 0 UNKNOWN
Cyanobium sp. med843 Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanobium sp. pcc 7001 Bacteria Cyanobacteria NCBI 0 0 UNKNOWN
Cyanobium sp. rs427 Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cyanothece sp. Bacteria Cyanobacteriota NCBI 0   UNKNOWN
Cypridina Eukaryota Arthropoda NCBI 0 0 UNKNOWN
Cypridinidae sp. ep1925320 Eukaryota Arthropoda NCBI 0 0 UNKNOWN
Dendronephthya sp. ssal-2002 Eukaryota Cnidaria NCBI 0   UNKNOWN
Desulfomicrobium baculatum Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfomicrobium baculatum dsm 4028 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfotalea psychrophila lsv54 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Dethiosulfovibrio peptidovorans dsm 11002 Bacteria Synergistota NCBI 0   UNKNOWN
Dicentrarchus labrax encephalitis virus Viruses Kitrinoviricota NCBI 0 0 UNKNOWN
Discosoma Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Discosoma sp. Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Discosoma sp. lw-2004 Eukaryota Cnidaria NCBI 0   UNKNOWN
Discosoma sp. rc-2004 Eukaryota Cnidaria NCBI 0   UNKNOWN
Discosoma sp. ssal-2000 Eukaryota Cnidaria NCBI 0   UNKNOWN
Discosoma striata Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Dokdonia donghaensis dsw-1 Bacteria Bacteroidota NCBI 0   UNKNOWN
Dunaliella Eukaryota Chlorophyta NCBI 0 0 UNKNOWN
Dunaliella bioculata Eukaryota Chlorophyta NCBI 0 0 UNKNOWN
Dunaliella viridis Eukaryota Chlorophyta NCBI 0   UNKNOWN
Echinophyllia Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Echinophyllia sp. sc22 Eukaryota Cnidaria NCBI 0   UNKNOWN
Ectothiorhodospira sp. phs-1 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Elasmobranchii Eukaryota Chordata NCBI 0 0 UNKNOWN
Emiliania huxleyi ccmp1516 Eukaryota Haptophyta NCBI 0 0 UNKNOWN
Eutreptiella sp. ccmp389 Eukaryota Euglenozoa NCBI 0 0 UNKNOWN
Flavivirga rizhaonensis Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteria bacterium bbfl7 Bacteria Bacteroidota NCBI 0 0 UNKNOWN
Flavobacteriaceae bacterium Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteriales bacterium Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacteriales bacterium brh_c54 Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium aquatile Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium branchiophilum Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium crassostreae Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium psychrophilum Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium sp. tab 87 Bacteria Bacteroidota NCBI 0   UNKNOWN
Flavobacterium sp. umi-01 Bacteria Bacteroidota NCBI 0   UNKNOWN
Fragilariopsis cylindrus ccmp1102 Eukaryota Gyrista NCBI 0   UNKNOWN
Fulvimarina pelagi htcc2506 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Fulvimarina sp Bacteria Pseudomonadota NCBI 0   UNKNOWN
Fungia Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Glaciecola punicea acam 611 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Griffithsia sp. Eukaryota Rhodophyta NCBI 0   UNKNOWN
Halichondria okadai Eukaryota Porifera NCBI 0 0 UNKNOWN
Haliotis kamtschatkana assimilis Eukaryota Mollusca NCBI 0 0 UNKNOWN
Haloferax mediterranei Archaea Euryarchaeota NCBI 0 0 UNKNOWN
Halomonas maris Bacteria Pseudomonadota NCBI 0   UNKNOWN
Halomonas sp. htnk1 Bacteria Pseudomonadota NCBI     UNKNOWN
Heteractis crispa Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Heteractis sp. Eukaryota Cnidaria NCBI 0 0 UNKNOWN
Hoeflea sp. ec-hk425 Bacteria Pseudomonadota NCBI 0   UNKNOWN
Holothuria leucospilota Eukaryota Echinodermata NCBI 0 0 UNKNOWN
Hondaea fermentalgiana Eukaryota Bigyra NCBI 0   UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );