Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

230 rows where Is_deep_sea = 1

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Suggested facets: Taxonomic_source, is_ABNJ_present

Is_ABNJ_present 3

Domain 3

Is_deep_sea 1

Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Aequorea macrodactyla Eukaryota Cnidaria WoRMS 1 WoRDSS YES
Aeropyrum camini sy1 = jcm 12091 Archaea Thermoproteota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2675903482 UNKNOWN
Aeropyrum pernix Archaea Crenarchaeota WoRMS 1 2018 UNKNOWN
Aeropyrum pernix k1 Archaea Thermoproteota Wikipedia 1 2018 UNKNOWN
Alcanivorax Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.049957-0 UNKNOWN
Alcanivorax pacificus Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Alteromonas macleodii Bacteria Proteobacteria WoRMS 1 2018 YES
Alteromonas mediterranea de Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s10482-014-0309-y UNKNOWN
Alteromonas sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s00203-022-02908-8 UNKNOWN
Alvinella caudata Eukaryota Annelida WoRMS 1 WoRDSS YES
Alvinella pompejana Eukaryota Annelida WoRMS 1 WoRDSS YES
Alvinella pompejana epibiont 6c6 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Amphibalanus amphitrite Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Aquifex pyrophilus Bacteria Aquificae WoRMS 1 2018 UNKNOWN
Archaeoglobus fulgidus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Archaeoglobus fulgidus dsm 4304 Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Archaeoglobus lithotrophicus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Archaeoglobus profundus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Archaeoglobus veneficus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Aurantimonas Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1080/01490450902724840 UNKNOWN
Beroe abyssicola Eukaryota Ctenophora WoRMS 1 WoRDSS NO
Bolinopsis infundibulum Eukaryota Ctenophora WoRMS 1 WoRDSS NO
Bythograea thermydron Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Caldithrix abyssi Bacteria Bacteria incertae sedis WoRMS 1 WoRDSS YES
Caldithrix abyssi dsm 13497 Bacteria Calditrichota NCBI 1 WoRDSS UNKNOWN
Calditrix abyssi Bacteria Calditrichaeota NCBI 1 https://doi.org/10.1099/ijs.0.02390-0 UNKNOWN
Caminibacter hydrogeniphilus Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Caminibacter mediatlanticus Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Caminibacter mediatlanticus tb-2 Bacteria Campylobacterota Wikipedia 1 2018 UNKNOWN
Chaetopterus variopedatus Eukaryota Annelida WoRMS 1 WoRDSS YES
Chionoecetes opilio Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Chiridius poppei Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Conger conger Eukaryota Chordata WoRMS 1 WoRDSS YES
Conus miliaris Eukaryota Mollusca WoRMS 1 WoRDSS YES
Corynactis californica Eukaryota Cnidaria WoRMS 1 WoRDSS YES
Cyanea capillata Eukaryota Cnidaria WoRMS 1 WoRDSS YES
Dosidicus gigas Eukaryota Mollusca WoRMS 1 WoRDSS YES
Erythrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijsem.0.003136 UNKNOWN
Euphausia pacifica Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Euphausia superba Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Gadus morhua Eukaryota Chordata WoRMS 1 WoRDSS YES
Gammaproteobacteria Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Gaussia princeps Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Geobacillus kaustophilus Bacteria Firmicutes WoRMS 1 2018 UNKNOWN
Geobacillus kaustophilus hta426 Bacteria Bacillota Wikipedia 1 2018 UNKNOWN
Ginglymostoma cirratum Eukaryota Chordata WoRMS 1 WoRDSS NO
Glyptocephalus cynoglossus Eukaryota Chordata WoRMS 1 WoRDSS YES
Halomonas titanicae Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.020628-0 UNKNOWN
Heterorhabdus tanneri Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Heterostylites major Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Hippoglossoides platessoides Eukaryota Chordata WoRMS 1 WoRDSS YES
Hippoglossus hippoglossus Eukaryota Chordata WoRMS 1 WoRDSS YES
Hippoglossus stenolepis Eukaryota Chordata WoRMS 1 WoRDSS YES
Homarus americanus Eukaryota Arthropoda WoRMS 1 WoRDSS NO
Hydrogenovibrio crunogenus Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/jb.187.16.5761-5766.2005 UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN
Hyphomonas pacifica Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-016-0712-7 UNKNOWN
Idiomarina loihiensis Bacteria Proteobacteria WoRMS 1 2018 YES
Idiomarina loihiensis l2tr Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Ignicoccus hospitalis Archaea Crenarchaeota WoRMS 1 2018 UNKNOWN
Katsuwonus pelamis Eukaryota Chordata WoRMS 1 WoRDSS YES
Leeuwenhoekiella nanhaiensis Bacteria Bacteroidota Wikipedia 1 https://doi.org/10.1099/ijsem.0.000883 UNKNOWN
Loligo forbesii Eukaryota Mollusca WoRMS 1 WoRDSS YES
Loligo vulgaris Eukaryota Mollusca WoRMS 1 WoRDSS NO
Lophius americanus Eukaryota Chordata WoRMS 1 WoRDSS YES
Lytechinus variegatus Eukaryota Echinodermata WoRMS 1 WoRDSS NO
Maribacter hydrothermalis Bacteria Bacteroidota NCBI 1 https://doi.org/10.1007/s00284-021-02519-4 UNKNOWN
Marinactinospora thermotolerans Bacteria Actinobacteria WoRMS 1 WoRDSS UNKNOWN
Marinactinospora thermotolerans dsm 45154 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1099/ijs.0.005231-0 UNKNOWN
Marinobacter manganoxydans mni7-9 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Marinobacter salinexigens Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1099/ijsem.0.004236 UNKNOWN
Marinobacter santoriniensis nksg1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2545824694 UNKNOWN
Marinobacter sp. ac-23 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2855226351 UNKNOWN
Marinomonas Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Marinomonas profundimaris Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Mariprofundus ferrooxydans Bacteria Proteobacteria WoRMS 1 2018 YES
Mariprofundus ferrooxydans pv-1 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=639857004 UNKNOWN
Melanogrammus aeglefinus Eukaryota Chordata WoRMS 1 WoRDSS YES
Methanocaldococcus Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Methanocaldococcus jannaschii Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Methanocaldococcus jannaschii dsm 2661 Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Methanocaldococcus sp. Archaea Euryarchaeota NCBI 1 https://doi.org/10.1126/science.1134772 UNKNOWN
Methanocaldococcus villosus kin24-t80 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.023663-0 UNKNOWN
Methanococcus aeolicus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Methanopyrus kandleri Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Methanopyrus kandleri av19 Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Methanotorris formicicus mc-s-70 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.02887-0 UNKNOWN
Methanotorris igneus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Metridia asymmetrica Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Metridia curticauda Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Metridia longa Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Metridia okhotensis Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Metridia pacifica Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Microbulbifer agarilyticus Bacteria Proteobacteria WoRMS 1 WoRDSS YES
Microbulbifer thermotolerans Bacteria Proteobacteria WoRMS 1 WoRDSS YES
Mitrocoma cellularia Eukaryota Cnidaria WoRMS 1 WoRDSS NO
Moritella abyssi Bacteria Proteobacteria WoRMS 1 2018 YES
Moritella marina atcc 15381 Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/JB.01382-12 UNKNOWN
Moritella profunda Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );