Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

47 rows where Is_deep_sea = 1 and Taxonomic_source = "NCBI"

✎ View and edit SQL

This data as json, CSV (advanced)

Domain 2

Is_deep_sea 1

Is_ABNJ_present 1

Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Aeropyrum camini sy1 = jcm 12091 Archaea Thermoproteota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2675903482 UNKNOWN
Alvinella pompejana epibiont 6c6 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Caldithrix abyssi dsm 13497 Bacteria Calditrichota NCBI 1 WoRDSS UNKNOWN
Calditrix abyssi Bacteria Calditrichaeota NCBI 1 https://doi.org/10.1099/ijs.0.02390-0 UNKNOWN
Hydrogenovibrio thermophilus Bacteria Pseudomonadota NCBI 1 https://doi.org/10.3389/fmicb.2017.02513 UNKNOWN
Hyphomonas hirschiana vp5 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0035296 UNKNOWN
Hyphomonas pacifica Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-016-0712-7 UNKNOWN
Maribacter hydrothermalis Bacteria Bacteroidota NCBI 1 https://doi.org/10.1007/s00284-021-02519-4 UNKNOWN
Marinactinospora thermotolerans dsm 45154 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1099/ijs.0.005231-0 UNKNOWN
Marinobacter manganoxydans mni7-9 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Marinobacter salinexigens Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1099/ijsem.0.004236 UNKNOWN
Marinobacter santoriniensis nksg1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2545824694 UNKNOWN
Marinobacter sp. ac-23 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2855226351 UNKNOWN
Marinomonas profundimaris Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1007/s10482-014-0213-5 UNKNOWN
Methanocaldococcus sp. Archaea Euryarchaeota NCBI 1 https://doi.org/10.1126/science.1134772 UNKNOWN
Methanocaldococcus villosus kin24-t80 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.023663-0 UNKNOWN
Methanotorris formicicus mc-s-70 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.02887-0 UNKNOWN
Moritella sp. pe36 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Nitratireductor indicus c115 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0025194 UNKNOWN
Polaribacter pacificus Bacteria Bacteroidota NCBI 1 https://doi.org/10.1099/ijsem.0.002082 UNKNOWN
Psychrobacter sp. antimn-1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2718218092 UNKNOWN
Psychrobacter sp. kh172yl61 Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1128/mra.00326-19 UNKNOWN
Psychroflexus salarius Bacteria Bacteroidota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0143309 UNKNOWN
Rhodothermus profundi Bacteria Rhodothermota NCBI 1 https://doi.org/10.1099/ijs.0.012724-0 UNKNOWN
Salinispora sp. h7-4 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1128/MRA.00834-20 UNKNOWN
Sulfurovum riftiae Bacteria Campylobacterota NCBI 1 https://doi.org/10.1099/ijsem.0.001106 UNKNOWN
Sulfurovum sp. Bacteria Campylobacterota NCBI 1 https://doi.org/10.1111/j.1462-2920.2010.02155.x UNKNOWN
Thermococcus Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus celer vu 13 = jcm 8558 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1128/genomea.00037-18 UNKNOWN
Thermococcus eurythermalis Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.067942-0 UNKNOWN
Thermococcus gorgonariusorganism Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/00207713-48-1-23 UNKNOWN
Thermococcus guaymasensis dsm 11113 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/00207713-48-4-1181 UNKNOWN
Thermococcus nautili Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.060376-0 UNKNOWN
Thermococcus onnurineus na1 Archaea Euryarchaeota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=643348580 UNKNOWN
Thermococcus piezophilus Archaea Euryarchaeota NCBI 1 https://doi.org/10.1016/j.syapm.2016.08.003 UNKNOWN
Thermococcus sp. Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. b1001 Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. es12 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organisms?id=Go0572421 UNKNOWN
Thermococcus sp. gr4 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. gr5 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. gr6 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. gr7 Archaea Euryarchaeota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0572422 UNKNOWN
Thermococcus sp. jcm 11816 Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. jdf-3 Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus sp. ls1 Archaea Euryarchaeota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=3002681924 UNKNOWN
Thermococcus sp. mv11 Archaea Euryarchaeota NCBI 1 https://cedar.wwu.edu/wwuet/926 UNKNOWN
Vibrio antiquarius Bacteria Proteobacteria NCBI 1 https://doi.org/10.1073/pnas.1503928112 UNKNOWN

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );