Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

230 rows where Is_deep_sea = 1

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Is_ABNJ_present 3

Domain 3

Is_deep_sea 1

Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Moritella sp. pe36 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Muraenesox cinereus Eukaryota Chordata WoRMS 1 WoRDSS YES
Mustelus canis Eukaryota Chordata WoRMS 1 WoRDSS YES
Nitratifractor salsuginis Bacteria Proteobacteria WoRMS 1 WoRDSS NO
Nitratireductor indicus Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Nitratireductor indicus c115 Bacteria Pseudomonadota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0025194 UNKNOWN
Nitratiruptor sp. Bacteria Campylobacterota Wikipedia 1 https://doi.org/10.1099/ijs.0.63480-0 UNKNOWN
Nitratiruptor sp. sb155-2 Bacteria Campylobacterota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=640753037 UNKNOWN
Nitratiruptor tergarcus Bacteria Proteobacteria WoRMS 1 WoRDSS NO
Obelia longissima Eukaryota Cnidaria WoRMS 1 WoRDSS YES
Oceanobacillus iheyensis Bacteria Firmicutes WoRMS 1 2018 UNKNOWN
Oceanobacillus iheyensis hte831 Bacteria Bacillota Wikipedia 1 2018 UNKNOWN
Oceanobacillus piezotolerans Bacteria Bacillota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2840774770 UNKNOWN
Octopus vulgaris Eukaryota Mollusca WoRMS 1 WoRDSS YES
Oplophorus gracilirostris Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Orcinus orca Eukaryota Chordata WoRMS 1 WoRDSS YES
Palaeococcus ferrophilus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Pandalus borealis Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Penaeus japonicus Eukaryota Arthropoda WoRMS 1 WoRDSS NO
Penaeus monodon Eukaryota Arthropoda WoRMS 1 WoRDSS NO
Persephonella marina Bacteria Aquificae WoRMS 1 WoRDSS UNKNOWN
Petromyzon marinus Eukaryota Chordata WoRMS 1 WoRDSS YES
Photobacterium phosphoreum Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/genomeA.00096-14 UNKNOWN
Photobacterium profundum Bacteria Proteobacteria WoRMS 1 WoRDSS YES
Photobacterium profundum ss9 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Photobacterium sp. ska34 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Physeter macrocephalus Eukaryota Chordata WoRMS 1 WoRDSS YES
Platynereis dumerilii Eukaryota Annelida WoRMS 1 WoRDSS YES
Pleuromamma scutullata Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Pleuromamma xiphias Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Polaribacter pacificus Bacteria Bacteroidota NCBI 1 https://doi.org/10.1099/ijsem.0.002082 UNKNOWN
Pollachius virens Eukaryota Chordata WoRMS 1 WoRDSS YES
Pontellina plumata Eukaryota Arthropoda WoRMS 1 WoRDSS YES
Pseudoalteromonas sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1038/ismej.2010.103 UNKNOWN
Pseudopleuronectes americanus Eukaryota Chordata WoRMS 1 WoRDSS NO
Psychrobacter sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1128/MRA.00326-19 UNKNOWN
Psychrobacter sp. antimn-1 Bacteria Pseudomonadota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2718218092 UNKNOWN
Psychrobacter sp. kh172yl61 Bacteria Pseudomonadota NCBI 1 https://doi.org/10.1128/mra.00326-19 UNKNOWN
Psychroflexus salarius Bacteria Bacteroidota NCBI 1 https://gold.jgi.doe.gov/organism?id=Go0143309 UNKNOWN
Ptilosarcus gurneyi Eukaryota Cnidaria WoRMS 1 WoRDSS NO
Pyrococcus Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Pyrococcus abyssi Archaea Euryarchaeota WoRMS 1 WoRDSS UNKNOWN
Pyrococcus abyssi ge5 Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Pyrococcus furiosus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Pyrococcus furiosus c Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Pyrococcus furiosus dsm 3638 Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Pyrococcus horikoshii Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Pyrococcus horikoshii ot3 Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Pyrococcus sp. Archaea Euryarchaeota Wikipedia 1 2018 UNKNOWN
Pyrococcus sp. na2 Archaea Euryarchaeota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=650716079 UNKNOWN
Pyrococcus woesei Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Pyrodictium Archaea Thermoproteota Wikipedia 1 https://doi.org/10.1016/S0723-2020(83)80011-3 UNKNOWN
Pyrolobus fumarii Archaea Crenarchaeota WoRMS 1 2018 UNKNOWN
Reinhardtius hippoglossoides Eukaryota Chordata WoRMS 1 WoRDSS YES
Rhodothermus profundi Bacteria Rhodothermota NCBI 1 https://doi.org/10.1099/ijs.0.012724-0 UNKNOWN
Roseovarius Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.023168-0 UNKNOWN
Roseovarius sp. Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1099/ijs.0.023168-0 UNKNOWN
Salinispora sp. h7-4 Bacteria Actynomycetota NCBI 1 https://doi.org/10.1128/MRA.00834-20 UNKNOWN
Scolymia cubensis Eukaryota Cnidaria WoRMS 1 WoRDSS NO
Scomber japonicus Eukaryota Chordata WoRMS 1 WoRDSS YES
Scomber scombrus Eukaryota Chordata WoRMS 1 WoRDSS YES
Seriola dumerili Eukaryota Chordata WoRMS 1 WoRDSS YES
Seriola lalandi Eukaryota Chordata WoRMS 1 WoRDSS YES
Shewanella benthica Bacteria Proteobacteria WoRMS 1 2018 YES
Shewanella benthica kt99 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2501651207 UNKNOWN
Shewanella oneidensis Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mr-1 Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtra Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtra-f Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrabc Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrb Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrc Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrd Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrdef Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtre Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrf Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis mtrfcab Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella oneidensis omca Bacteria Pseudomonadota Wikipedia 1 2018 UNKNOWN
Shewanella sp. w3-18-1 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=639633059 UNKNOWN
Shewanella violacea dss12 Bacteria Pseudomonadota Wikipedia 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=646564568 UNKNOWN
Skeletonema costatum Eukaryota Ochrophyta WoRMS 1 WoRDSS YES
Sphaerechinus granularis Eukaryota Echinodermata WoRMS 1 WoRDSS NO
Squalus acanthias Eukaryota Chordata WoRMS 1 WoRDSS YES
Strongylocentrotus droebachiensis Eukaryota Echinodermata WoRMS 1 WoRDSS YES
Sulfitobacter Bacteria Pseudomonadota Wikipedia 1 https://doi.org/10.1007/s12275-019-9150-3 UNKNOWN
Sulfurimonas denitrificans Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Sulfurovum riftiae Bacteria Campylobacterota NCBI 1 https://doi.org/10.1099/ijsem.0.001106 UNKNOWN
Sulfurovum sp. Bacteria Campylobacterota NCBI 1 https://doi.org/10.1111/j.1462-2920.2010.02155.x UNKNOWN
Sulfurovum sp. nbc37-1 Bacteria Campylobacterota Wikipedia 1 2018 UNKNOWN
Thermococcus Archaea Euryarchaeota NCBI 1 2018 UNKNOWN
Thermococcus barophilus Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Thermococcus celer vu 13 = jcm 8558 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1128/genomea.00037-18 UNKNOWN
Thermococcus chitonophagus Archaea Euryarchaeota WoRMS 1 WoRDSS UNKNOWN
Thermococcus eurythermalis Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.067942-0 UNKNOWN
Thermococcus gorgonarius Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Thermococcus gorgonariusorganism Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/00207713-48-1-23 UNKNOWN
Thermococcus guaymasensis dsm 11113 Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/00207713-48-4-1181 UNKNOWN
Thermococcus litoralis Archaea Euryarchaeota WoRMS 1 2018 UNKNOWN
Thermococcus nautili Archaea Euryarchaeota NCBI 1 https://doi.org/10.1099/ijs.0.060376-0 UNKNOWN
Thermococcus onnurineus na1 Archaea Euryarchaeota NCBI 1 https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=643348580 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );