Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

28 rows where Phylum = "Proteobacteria" and Taxonomic_source = "NCBI"

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Suggested facets: Deep_sea_source

Is_deep_sea 2

  • 0 24
  • 1 4

Phylum 1

  • Proteobacteria · 28 ✖

Is_ABNJ_present 1

Domain 1

Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Alvinella pompejana epibiont 6c6 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Candidatus endobugula sertula Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Candidatus pelagibacter ubique Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfomicrobium baculatum Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfomicrobium baculatum dsm 4028 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Desulfotalea psychrophila lsv54 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Marinobacter manganoxydans mni7-9 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Moritella sp. pe36 Bacteria Proteobacteria NCBI 1 2018 UNKNOWN
Moritella viscosa Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Nitrococcus mobilis nb-231 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Pseudovibrio sp. fo-beg1 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Psychromonas ingrahamii 37 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Reinekea sp. Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Shewanella massilia Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Shewanella putida Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Teredinibacter Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Teredinibacter turnerae t7901 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Thiocapsa roseopersicina Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured marine alpha proteobacterium hot2c01 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured marine gamma proteobacterium ebac20e09 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured marine proteobacterium ant8c10 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured vibrio sp Bacteria Proteobacteria NCBI 0   UNKNOWN
Vibrio antiquarius Bacteria Proteobacteria NCBI 1 https://doi.org/10.1073/pnas.1503928112 UNKNOWN
Vibrio shilonii ak1 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Vibrio sp. Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Vibrio sp. and4 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Vibrio sp. ax-4 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Vibrio sp. ejy3 Bacteria Proteobacteria NCBI 0 0 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );