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Marine_Species

Catalogs marine species associated with genetic sequences in the dataset. It includes the species name, taxonomic classification (domain, phylum), and information on whether the species is considered deep-sea.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Species_name
Name of the marine species (Primary Key). Searchable
Domain
Taxonomic domain of the species
Phylum
Taxonomic phylum of the species
Taxonomic_source
Source of the taxonomic classification
Is_deep_sea
Indicates if the species is a deep-sea species (1 for yes, 0 for no)
Deep_sea_source
Source of information on the species' deep-sea status
Is_ABNJ_present
Indicates if the species is present in ABNJ (YES, NO, UNKNOWN)

210 rows where Phylum = "Proteobacteria"

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Is_ABNJ_present 3

  • UNKNOWN 61
  • YES 32
  • NO 17

Is_deep_sea 2

  • 0 107
  • 1 3

Phylum 1

  • Proteobacteria · 110 ✖

Domain 1

  • Bacteria 110
Species_name ▼ Domain Phylum Taxonomic_source Is_deep_sea Deep_sea_source is_ABNJ_present
Pseudoalteromonas carrageenovora Bacteria Proteobacteria WoRMS 0 0 NO
Pseudoalteromonas citrea Bacteria Proteobacteria WoRMS 0   YES
Pseudoalteromonas flavipulchra Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Pseudoalteromonas haloplanktis Bacteria Proteobacteria WoRMS 0 0 YES
Pseudoalteromonas luteoviolacea Bacteria Proteobacteria WoRMS 0 0 YES
Pseudoalteromonas maricaloris Bacteria Proteobacteria WoRMS 0   NO
Pseudoalteromonas marina Bacteria Proteobacteria WoRMS 0 0 YES
Pseudoalteromonas nigrifaciens Bacteria Proteobacteria WoRMS 0   UNKNOWN
Pseudoalteromonas phenolica Bacteria Proteobacteria WoRMS 0   YES
Pseudoalteromonas piscicida Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Pseudoalteromonas tetraodonis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Pseudoalteromonas translucida Bacteria Proteobacteria WoRMS 0   NO
Pseudoalteromonas tunicata Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Pseudovibrio denitrificans Bacteria Proteobacteria WoRMS 0   UNKNOWN
Pseudovibrio sp. fo-beg1 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Psychrobacter maritimus Bacteria Proteobacteria WoRMS 0   UNKNOWN
Psychromonas ingrahamii Bacteria Proteobacteria WoRMS 0 0 YES
Psychromonas ingrahamii 37 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Reinekea sp. Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Rhodovulum strictum Bacteria Proteobacteria WoRMS 0   UNKNOWN
Rhodovulum sulfidophilum Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Roseobacter denitrificans Bacteria Proteobacteria WoRMS 0 0 NO
Roseobacter litoralis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Roseovarius mucosus Bacteria Proteobacteria WoRMS 0   UNKNOWN
Roseovarius nubinhibens Bacteria Proteobacteria WoRMS 0 0 YES
Ruegeria pomeroyi Bacteria Proteobacteria WoRMS 0 0 YES
Saccharophagus degradans Bacteria Proteobacteria WoRMS 0 0 YES
Sagittula stellata Bacteria Proteobacteria WoRMS 0 0 YES
Shewanella algae Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella amazonensis Bacteria Proteobacteria WoRMS 0   NO
Shewanella baltica Bacteria Proteobacteria WoRMS 0 0 NO
Shewanella benthica Bacteria Proteobacteria WoRMS 1 2018 YES
Shewanella canadensis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Shewanella colwelliana Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella denitrificans Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella frigidimarina Bacteria Proteobacteria WoRMS 0   NO
Shewanella hafniensis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Shewanella halifaxensis Bacteria Proteobacteria WoRMS 0   NO
Shewanella hanedai Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella japonica Bacteria Proteobacteria WoRMS 0 0 YES
Shewanella loihica Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella marinintestina Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella massilia Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Shewanella morhuae Bacteria Proteobacteria WoRMS 0   UNKNOWN
Shewanella olleyana Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella pealeana Bacteria Proteobacteria WoRMS 0   YES
Shewanella piezotolerans Bacteria Proteobacteria WoRMS 0   UNKNOWN
Shewanella pneumatophori Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Shewanella putida Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Shewanella putrefaciens Bacteria Proteobacteria WoRMS 0 0 NO
Shewanella sediminis Bacteria Proteobacteria WoRMS 0   YES
Shewanella violacea Bacteria Proteobacteria WoRMS 0 0 YES
Shewanella woodyi Bacteria Proteobacteria WoRMS 0 0 NO
Shewanella xiamenensis Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Sphingopyxis alaskensis Bacteria Proteobacteria WoRMS 0 0 NO
Sulfitobacter delicatus Bacteria Proteobacteria WoRMS 0   UNKNOWN
Sulfitobacter donghicola Bacteria Proteobacteria WoRMS 0 0 NO
Sulfitobacter litoralis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Sulfitobacter pontiacus Bacteria Proteobacteria WoRMS 0   YES
Sulfurimonas denitrificans Bacteria Proteobacteria WoRMS 1 2018 UNKNOWN
Teredinibacter Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Teredinibacter turnerae Bacteria Proteobacteria WoRMS 0 0 YES
Teredinibacter turnerae t7901 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Thalassospira lucentensis Bacteria Proteobacteria WoRMS 0   YES
Thalassospira profundimaris Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Thiocapsa roseopersicina Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured marine alpha proteobacterium hot2c01 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured marine gamma proteobacterium ebac20e09 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured marine proteobacterium ant8c10 Bacteria Proteobacteria NCBI 0 0 UNKNOWN
Uncultured vibrio sp Bacteria Proteobacteria NCBI 0   UNKNOWN
Vibrio alginolyticus Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio anguillarum Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio antiquarius Bacteria Proteobacteria NCBI 1 https://doi.org/10.1073/pnas.1503928112 UNKNOWN
Vibrio campbellii Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio chagasii Bacteria Proteobacteria WoRMS 0   UNKNOWN
Vibrio cholerae Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio coralliilyticus Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio diabolicus Bacteria Proteobacteria WoRMS 0   UNKNOWN
Vibrio diazotrophicus Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio fortis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Vibrio gazogenes Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio harveyi Bacteria Proteobacteria WoRMS 0 0 NO
Vibrio hepatarius Bacteria Proteobacteria WoRMS 0   NO
Vibrio ichthyoenteri Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio kanaloae Bacteria Proteobacteria WoRMS 0   NO
Vibrio lentus Bacteria Proteobacteria WoRMS 0   YES
Vibrio litoralis Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio mediterranei Bacteria Proteobacteria WoRMS 0 0 NO
Vibrio mimicus Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio mytili Bacteria Proteobacteria WoRMS 0   YES
Vibrio natriegens Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio nereis Bacteria Proteobacteria WoRMS 0   UNKNOWN
Vibrio nigripulchritudo Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio pacinii Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio parahaemolyticus Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio ponticus Bacteria Proteobacteria WoRMS 0   NO
Vibrio proteolyticus Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio ruber Bacteria Proteobacteria WoRMS 0 0 UNKNOWN
Vibrio scophthalmi Bacteria Proteobacteria WoRMS 0 0 YES
Vibrio shilonii ak1 Bacteria Proteobacteria NCBI 0 0 UNKNOWN

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CREATE TABLE Marine_Species (
        Species_name TEXT PRIMARY KEY,
        Domain TEXT,
        Phylum TEXT,
        Taxonomic_source TEXT,
        Is_deep_sea INTEGER,
        Deep_sea_source TEXT,
        is_ABNJ_present TEXT
    );
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