Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

37 rows where Is_annotated = 0, Sequence_length = "726.0" and Sequence_status = "observed"

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Suggested facets: GC_content

Is_protein_coding_sequence 2

  • 1 26
  • 0 11

Sequence_status 1

  • observed · 37 ✖

Is_annotated 1

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX088584 Megathura crenulata 36.3636363636364 726.0 observed 0 0
CS026637 Ciona intestinalis 40.633608815427 726.0 observed 0 0
CS079400 Montastraea cavernosa 45.8677685950413 726.0 observed 0 0
CS079417 Acropora millepora 44.2148760330578 726.0 observed 1 0
CS079427 Agaricia fragilis 46.2809917355372 726.0 observed 0 0
CS079429 Agaricia fragilis 46.0055096418733 726.0 observed 0 0
CS079431 Agaricia fragilis 46.4187327823691 726.0 observed 0 0
CS079432 Agaricia fragilis 46.0055096418733 726.0 observed 0 0
CS079433 Agaricia fragilis 46.1432506887052 726.0 observed 0 0
DL484319 Fundulus heteroclitus 40.495867768595 726.0 observed 1 0
DM012033 Anguilla japonica 53.8567493112948 726.0 observed 0 0
DM012509 Anguilla japonica 53.7190082644628 726.0 observed 0 0
GN042290 Gammaproteobacteria 51.2396694214876 726.0 observed 0 0
GN123052 Gamma proteobacterium htcc2207 48.8980716253444 726.0 observed 1 0
HB878967 Shewanella oneidensis 54.5454545454545 726.0 observed 1 0
HB879083 Photobacterium profundum 43.801652892562 726.0 observed 1 0
HB907101 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 0
HC196100 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
HC196866 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
HC906451 Pyrococcus horikoshii ot3 42.9752066115703 726.0 observed 1 0
HC931938 Vibrio parahaemolyticus 50.137741046832 726.0 observed 1 0
HC931960 Vibrio vulnificus 50.8264462809917 726.0 observed 1 0
HC932130 Photobacterium profundum 47.2451790633609 726.0 observed 1 0
HC935379 Oceanobacillus iheyensis 36.0881542699724 726.0 observed 1 0
HC935687 Shewanella oneidensis 54.5454545454545 726.0 observed 1 0
HC935803 Photobacterium profundum 43.801652892562 726.0 observed 1 0
HC936376 Shewanella oneidensis 54.5454545454545 726.0 observed 1 0
HC936492 Photobacterium profundum 43.801652892562 726.0 observed 1 0
HC964510 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 0
HI183783 Branchiostoma lanceolatum 52.0661157024793 726.0 observed 1 0
LG095056 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LG135299 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LG135348 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LQ215631 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LQ297302 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 0
LQ708004 Aeromonas salmonicida 56.7493112947658 726.0 observed 1 0
LQ708024 Aeromonas salmonicida 56.7493112947658 726.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );