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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

35 rows where Is_annotated = 0 and Species_name = "Vibrio antiquarius"

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These facets timed out: Species_name

Sequence_status 1

  • observed 35

Is_protein_coding_sequence 1

  • 1 35

Is_annotated 1

  • - · 35 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FB795140 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
FB836491 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
FB878966 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
FB903280 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
FB910961 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
FB929044 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
GM960946 Vibrio antiquarius 46.7365967365967 858.0 observed 1 0
GM962209 Vibrio antiquarius 43.2478632478633 1755.0 observed 1 0
GM962457 Vibrio antiquarius 46.5083798882682 2148.0 observed 1 0
GM962777 Vibrio antiquarius 45.3168044077135 1452.0 observed 1 0
GN096686 Vibrio antiquarius 45.5621301775148 1014.0 observed 1 0
GN110221 Vibrio antiquarius 44.9523809523809 1050.0 observed 1 0
GN117454 Vibrio antiquarius 47.0914127423823 1083.0 observed 1 0
GN128979 Vibrio antiquarius 47.0914127423823 1083.0 observed 1 0
GN129659 Vibrio antiquarius 47.8189300411523 1215.0 observed 1 0
HB438601 Vibrio antiquarius 38.5593220338983 708.0 observed 1 0
HB654996 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
HB665199 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
HB678092 Vibrio antiquarius 48.5975212002609 1533.0 observed 1 0
HB706550 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
HB715233 Vibrio antiquarius 47.3942969518191 1017.0 observed 1 0
HB737186 Vibrio antiquarius 47.43961352657 1035.0 observed 1 0
HB749025 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
HB768872 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
HB773339 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
HB781020 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
HB799103 Vibrio antiquarius 45.1576576576577 888.0 observed 1 0
HB817569 Vibrio antiquarius 49.2374727668845 918.0 observed 1 0
HC497221 Vibrio antiquarius 44.4961240310078 645.0 observed 1 0
HC505086 Vibrio antiquarius 38.5593220338983 708.0 observed 1 0
HC505446 Vibrio antiquarius 46.4539007092199 1128.0 observed 1 0
HH764054 Vibrio antiquarius 45.1388888888889 1152.0 observed 1 0
HH764469 Vibrio antiquarius 38.5593220338983 708.0 observed 1 0
HH765287 Vibrio antiquarius 46.7365967365967 858.0 observed 1 0
HH765289 Vibrio antiquarius 46.1375661375661 1890.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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