Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
117 rows where Is_annotated = 1, Is_protein_coding_sequence = 1 and Sequence_length = "720.0"
This data as json, CSV (advanced)
Species_name >30
- Odobenus rosmarus divergens 52
- Aequorea victoria 20
- Physeter macrocephalus 6
- Trichechus manatus latirostris 5
- Anabaena sp. ybs01 3
- Photobacterium profundum 2
- Synechococcus sp. 2
- Vibrio cholerae o1 biovar el tor str. n16961 2
- Aliivibrio fischeri es114 1
- Archaeoglobus fulgidus dsm 4304 1
- Bermanella marisrubri 1
- Cyanobium sp. rs427 1
- Erythrobacter sp. nap1 1
- Magnetococcus marinus 1
- Magnetococcus marinus mc-1 1
- Methanococcus maripaludis 1
- Ostreococcus tauri 1
- Photobacterium frigidiphilum 1
- Prochlorococcus marinus 1
- Prochlorococcus marinus str. natl1a 1
- Prochlorococcus marinus str. natl2a 1
- Psychromonas sp. b3m02 1
- Renilla reniformis 1
- Rhodopirellula baltica 1
- Salmo salar 1
- Shewanella oneidensis 1
- Thiocapsa roseopersicina 1
- Uncultured roseobacter sp 1
- Vibrio algivorus 1
- Vibrio cholerae 1
- …
Is_protein_coding_sequence 1
- 1 · 117 ✖
Is_annotated 1
- 1 · 117 ✖
| Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
|---|---|---|---|---|---|---|
| AX343037 | Aequorea victoria | 61.1111111111111 | 720.0 | observed | 1 | 1 |
| AX343039 | Aequorea victoria | 61.1111111111111 | 720.0 | observed | 1 | 1 |
| AX815523 | Aequorea victoria | 61.6666666666667 | 720.0 | observed | 1 | 1 |
| BD136949 | Aequorea victoria | 62.2222222222222 | 720.0 | observed | 1 | 1 |
| CQ881127 | Vibrio cholerae | 39.8611111111111 | 720.0 | observed | 1 | 1 |
| CQ896997 | Aequorea victoria | 61.5277777777778 | 720.0 | observed | 1 | 1 |
| CS682457 | Ostreococcus tauri | 57.9166666666667 | 720.0 | observed | 1 | 1 |
| DD017653 | Renilla reniformis | 61.5277777777778 | 720.0 | observed | 1 | 1 |
| DD055377 | Aequorea victoria | 43.1944444444444 | 720.0 | observed | 1 | 1 |
| DD087895 | Aequorea victoria | 62.0833333333333 | 720.0 | observed | 1 | 1 |
| DD087896 | Aequorea victoria | 61.5277777777778 | 720.0 | observed | 1 | 1 |
| DD087897 | Aequorea victoria | 61.3888888888889 | 720.0 | observed | 1 | 1 |
| DD258990 | Aequorea victoria | 61.9444444444444 | 720.0 | observed | 1 | 1 |
| DD400878 | Aequorea victoria | 42.5 | 720.0 | observed | 1 | 1 |
| DJ380371 | Aequorea victoria | 61.3888888888889 | 720.0 | observed | 1 | 1 |
| DM148078 | Aequorea victoria | 62.0833333333333 | 720.0 | observed | 1 | 1 |
| GM957293 | Bermanella marisrubri | 46.6666666666667 | 720.0 | observed | 1 | 1 |
| GM958465 | Vibrio cholerae o1 biovar el tor str. n16961 | 52.0833333333333 | 720.0 | observed | 1 | 1 |
| GN124713 | Prochlorococcus marinus str. natl1a | 31.8055555555556 | 720.0 | observed | 1 | 1 |
| GN124723 | Prochlorococcus marinus str. natl2a | 31.9444444444444 | 720.0 | observed | 1 | 1 |
| GN125158 | Erythrobacter sp. nap1 | 58.75 | 720.0 | observed | 1 | 1 |
| HB874525 | Vibrio parahaemolyticus | 49.0277777777778 | 720.0 | observed | 1 | 1 |
| HB875836 | Shewanella oneidensis | 49.0277777777778 | 720.0 | observed | 1 | 1 |
| HB878194 | Rhodopirellula baltica | 56.3888888888889 | 720.0 | observed | 1 | 1 |
| HB878384 | Photobacterium profundum | 46.5277777777778 | 720.0 | observed | 1 | 1 |
| HB878386 | Photobacterium profundum | 43.4722222222222 | 720.0 | observed | 1 | 1 |
| HB907209 | Thiocapsa roseopersicina | 65.2777777777778 | 720.0 | observed | 1 | 1 |
| HB907846 | Magnetococcus marinus mc-1 | 49.5833333333333 | 720.0 | observed | 1 | 1 |
| HB937666 | Archaeoglobus fulgidus dsm 4304 | 50.9722222222222 | 720.0 | observed | 1 | 1 |
| HB961400 | Vibrio cholerae o1 biovar el tor str. n16961 | 51.1111111111111 | 720.0 | observed | 1 | 1 |
| HB961508 | Vibrio parahaemolyticus rimd 2210633 | 46.8055555555556 | 720.0 | observed | 1 | 1 |
| HB961664 | Aliivibrio fischeri es114 | 43.1944444444444 | 720.0 | observed | 1 | 1 |
| HC498205 | Methanococcus maripaludis | 35.2777777777778 | 720.0 | observed | 1 | 1 |
| HC498319 | Synechococcus sp. | 59.4444444444444 | 720.0 | observed | 1 | 1 |
| HC498323 | Synechococcus sp. | 61.5277777777778 | 720.0 | observed | 1 | 1 |
| HC906833 | Prochlorococcus marinus | 30.5555555555556 | 720.0 | observed | 1 | 1 |
| HI659707 | Anabaena sp. ybs01 | 44.3055555555556 | 720.0 | predicted | 1 | 1 |
| HI665801 | Photobacterium frigidiphilum | 43.4722222222222 | 720.0 | predicted | 1 | 1 |
| HI680396 | Magnetococcus marinus | 49.5833333333333 | 720.0 | predicted | 1 | 1 |
| HJ398079 | Uncultured roseobacter sp | 54.7222222222222 | 720.0 | predicted | 1 | 1 |
| HJ398450 | Cyanobium sp. rs427 | 59.4444444444444 | 720.0 | predicted | 1 | 1 |
| HK084044 | Anabaena sp. ybs01 | 43.0555555555556 | 720.0 | predicted | 1 | 1 |
| HK687255 | Anabaena sp. ybs01 | 44.0277777777778 | 720.0 | predicted | 1 | 1 |
| HK891605 | Odobenus rosmarus divergens | 60.0 | 720.0 | predicted | 1 | 1 |
| HK895306 | Odobenus rosmarus divergens | 48.0555555555556 | 720.0 | predicted | 1 | 1 |
| HK899007 | Odobenus rosmarus divergens | 58.6111111111111 | 720.0 | predicted | 1 | 1 |
| HK902708 | Odobenus rosmarus divergens | 50.6944444444444 | 720.0 | predicted | 1 | 1 |
| HK906409 | Odobenus rosmarus divergens | 49.3055555555556 | 720.0 | predicted | 1 | 1 |
| HV761149 | Aequorea victoria | 61.5277777777778 | 720.0 | observed | 1 | 1 |
| HW534261 | Aequorea victoria | 38.75 | 720.0 | observed | 1 | 1 |
| HW907032 | Vibrio sp. | 38.6111111111111 | 720.0 | observed | 1 | 1 |
| HZ283588 | Trichechus manatus latirostris | 62.5 | 720.0 | predicted | 1 | 1 |
| HZ283894 | Odobenus rosmarus divergens | 60.5555555555556 | 720.0 | predicted | 1 | 1 |
| HZ291576 | Trichechus manatus latirostris | 50.6944444444444 | 720.0 | predicted | 1 | 1 |
| HZ291882 | Odobenus rosmarus divergens | 50.1388888888889 | 720.0 | predicted | 1 | 1 |
| HZ299564 | Trichechus manatus latirostris | 59.0277777777778 | 720.0 | predicted | 1 | 1 |
| HZ299870 | Odobenus rosmarus divergens | 59.4444444444444 | 720.0 | predicted | 1 | 1 |
| HZ307552 | Trichechus manatus latirostris | 51.3888888888889 | 720.0 | predicted | 1 | 1 |
| HZ307858 | Odobenus rosmarus divergens | 48.0555555555556 | 720.0 | predicted | 1 | 1 |
| HZ315540 | Trichechus manatus latirostris | 48.0555555555556 | 720.0 | predicted | 1 | 1 |
| HZ315846 | Odobenus rosmarus divergens | 46.9444444444444 | 720.0 | predicted | 1 | 1 |
| HZ322128 | Odobenus rosmarus divergens | 47.6388888888889 | 720.0 | predicted | 1 | 1 |
| HZ322161 | Odobenus rosmarus divergens | 46.8055555555556 | 720.0 | predicted | 1 | 1 |
| JA389482 | Aequorea victoria | 61.6666666666667 | 720.0 | observed | 1 | 1 |
| LF442286 | Physeter macrocephalus | 63.3333333333333 | 720.0 | predicted | 1 | 1 |
| LF450374 | Odobenus rosmarus divergens | 61.8055555555556 | 720.0 | predicted | 1 | 1 |
| LF462219 | Odobenus rosmarus divergens | 66.25 | 720.0 | predicted | 1 | 1 |
| LF472426 | Odobenus rosmarus divergens | 60.5555555555556 | 720.0 | predicted | 1 | 1 |
| LF477684 | Physeter macrocephalus | 51.8055555555556 | 720.0 | predicted | 1 | 1 |
| LF485772 | Odobenus rosmarus divergens | 53.8888888888889 | 720.0 | predicted | 1 | 1 |
| LF485773 | Odobenus rosmarus divergens | 52.5 | 720.0 | predicted | 1 | 1 |
| LF497617 | Odobenus rosmarus divergens | 55.1388888888889 | 720.0 | predicted | 1 | 1 |
| LF507824 | Odobenus rosmarus divergens | 49.4444444444444 | 720.0 | predicted | 1 | 1 |
| LF507825 | Odobenus rosmarus divergens | 48.4722222222222 | 720.0 | predicted | 1 | 1 |
| LF513082 | Physeter macrocephalus | 63.3333333333333 | 720.0 | predicted | 1 | 1 |
| LF521170 | Odobenus rosmarus divergens | 60.1388888888889 | 720.0 | predicted | 1 | 1 |
| LF533015 | Odobenus rosmarus divergens | 65.2777777777778 | 720.0 | predicted | 1 | 1 |
| LF543222 | Odobenus rosmarus divergens | 57.6388888888889 | 720.0 | predicted | 1 | 1 |
| LF548480 | Physeter macrocephalus | 54.1666666666667 | 720.0 | predicted | 1 | 1 |
| LF556568 | Odobenus rosmarus divergens | 52.6388888888889 | 720.0 | predicted | 1 | 1 |
| LF556569 | Odobenus rosmarus divergens | 54.8611111111111 | 720.0 | predicted | 1 | 1 |
| LF568413 | Odobenus rosmarus divergens | 55.2777777777778 | 720.0 | predicted | 1 | 1 |
| LF578620 | Odobenus rosmarus divergens | 49.5833333333333 | 720.0 | predicted | 1 | 1 |
| LF578621 | Odobenus rosmarus divergens | 47.3611111111111 | 720.0 | predicted | 1 | 1 |
| LF583878 | Physeter macrocephalus | 51.6666666666667 | 720.0 | predicted | 1 | 1 |
| LF591966 | Odobenus rosmarus divergens | 50.8333333333333 | 720.0 | predicted | 1 | 1 |
| LF591967 | Odobenus rosmarus divergens | 52.2222222222222 | 720.0 | predicted | 1 | 1 |
| LF603811 | Odobenus rosmarus divergens | 54.7222222222222 | 720.0 | predicted | 1 | 1 |
| LF614018 | Odobenus rosmarus divergens | 48.4722222222222 | 720.0 | predicted | 1 | 1 |
| LF614019 | Odobenus rosmarus divergens | 45.5555555555556 | 720.0 | predicted | 1 | 1 |
| LF618717 | Odobenus rosmarus divergens | 46.6666666666667 | 720.0 | predicted | 1 | 1 |
| LF619323 | Odobenus rosmarus divergens | 44.0277777777778 | 720.0 | predicted | 1 | 1 |
| LF707639 | Aequorea victoria | 62.2222222222222 | 720.0 | observed | 1 | 1 |
| LF934813 | Vibrio algivorus | 38.6111111111111 | 720.0 | predicted | 1 | 1 |
| LF947189 | Aequorea victoria | 61.5277777777778 | 720.0 | observed | 1 | 1 |
| LQ639977 | Odobenus rosmarus divergens | 56.5277777777778 | 720.0 | predicted | 1 | 1 |
| LQ639978 | Odobenus rosmarus divergens | 67.0833333333333 | 720.0 | predicted | 1 | 1 |
| LQ639979 | Odobenus rosmarus divergens | 67.0833333333333 | 720.0 | predicted | 1 | 1 |
| LQ639980 | Odobenus rosmarus divergens | 51.5277777777778 | 720.0 | predicted | 1 | 1 |
| LQ639982 | Odobenus rosmarus divergens | 61.8055555555556 | 720.0 | predicted | 1 | 1 |
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CREATE TABLE Marine_Sequences (
Sequence_accession_number TEXT PRIMARY KEY,
Species_name TEXT,
GC_content TEXT,
Sequence_length TEXT,
Sequence_status TEXT,
Is_protein_coding_sequence INTEGER,
Is_annotated INTEGER,
FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
);