Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

28 rows where Is_annotated = 1, Sequence_length = "714.0" and Sequence_status = "observed"

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Sequence_status 1

  • observed · 28 ✖

Is_protein_coding_sequence 1

  • 1 28

Is_annotated 1

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CQ897008 Aequorea victoria 38.9355742296919 714.0 observed 1 1
CS469308 Pyrococcus horikoshii 46.358543417367 714.0 observed 1 1
DI356711 Bruguiera gymnorhiza 45.2380952380952 714.0 observed 1 1
DM011684 Anguilla japonica 61.624649859944 714.0 observed 1 1
E04354 Vibrio harveyi 44.6778711484594 714.0 observed 1 1
FB332996 Geobacillus kaustophilus hta426 50.8403361344538 714.0 observed 1 1
FB791793 Pyrobaculum aerophilum str. im2 46.7787114845938 714.0 observed 1 1
GN124352 Moritella sp. pe36 44.3977591036415 714.0 observed 1 1
GN125124 Magnetococcus marinus mc-1 54.6218487394958 714.0 observed 1 1
HB878388 Photobacterium profundum 40.8963585434174 714.0 observed 1 1
HB926241 Paralichthys olivaceus 52.6610644257703 714.0 observed 1 1
HC497911 Prochlorococcus marinus str. mit 9211 39.9159663865546 714.0 observed 1 1
HC497949 Trichodesmium erythraeum ims101 38.9355742296919 714.0 observed 1 1
HC497985 Synechococcus sp. wh 5701 68.6274509803922 714.0 observed 1 1
HC497999 Synechococcus sp. rs9916 60.7843137254902 714.0 observed 1 1
HC498061 Aeropyrum pernix 63.7254901960784 714.0 observed 1 1
HC498235 Prochlorococcus marinus 35.4341736694678 714.0 observed 1 1
HC498237 Prochlorococcus marinus 39.4957983193277 714.0 observed 1 1
HC899906 Methanocaldococcus jannaschii 30.1120448179272 714.0 observed 1 1
HV189965 Thermotoga maritima 43.8375350140056 714.0 observed 1 1
HV323304 Aequorea victoria 62.6050420168067 714.0 observed 1 1
HV338482 Ostreococcus tauri 58.1232492997199 714.0 observed 1 1
HV984597 Aequorea victoria 38.7955182072829 714.0 observed 1 1
JC251409 Synechococcus sp. 67.2268907563025 714.0 observed 1 1
LP129107 Methanocaldococcus 23.6694677871148 714.0 observed 1 1
LP129410 Nitrosococcus oceani 51.2605042016807 714.0 observed 1 1
MC003093 Aequorea victoria 47.4789915966387 714.0 observed 1 1
MP016858 Fulvimarina pelagi 55.1820728291317 714.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );