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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

45 rows where Is_annotated = 1, Sequence_length = "720.0" and Sequence_status = "observed"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX343037 Aequorea victoria 61.1111111111111 720.0 observed 1 1
AX343039 Aequorea victoria 61.1111111111111 720.0 observed 1 1
AX815523 Aequorea victoria 61.6666666666667 720.0 observed 1 1
BD136949 Aequorea victoria 62.2222222222222 720.0 observed 1 1
CQ881127 Vibrio cholerae 39.8611111111111 720.0 observed 1 1
CQ896997 Aequorea victoria 61.5277777777778 720.0 observed 1 1
CS682457 Ostreococcus tauri 57.9166666666667 720.0 observed 1 1
DD017653 Renilla reniformis 61.5277777777778 720.0 observed 1 1
DD055377 Aequorea victoria 43.1944444444444 720.0 observed 1 1
DD087895 Aequorea victoria 62.0833333333333 720.0 observed 1 1
DD087896 Aequorea victoria 61.5277777777778 720.0 observed 1 1
DD087897 Aequorea victoria 61.3888888888889 720.0 observed 1 1
DD258990 Aequorea victoria 61.9444444444444 720.0 observed 1 1
DD400878 Aequorea victoria 42.5 720.0 observed 1 1
DJ380371 Aequorea victoria 61.3888888888889 720.0 observed 1 1
DM148078 Aequorea victoria 62.0833333333333 720.0 observed 1 1
GM957293 Bermanella marisrubri 46.6666666666667 720.0 observed 1 1
GM958465 Vibrio cholerae o1 biovar el tor str. n16961 52.0833333333333 720.0 observed 1 1
GN124713 Prochlorococcus marinus str. natl1a 31.8055555555556 720.0 observed 1 1
GN124723 Prochlorococcus marinus str. natl2a 31.9444444444444 720.0 observed 1 1
GN125158 Erythrobacter sp. nap1 58.75 720.0 observed 1 1
HB874525 Vibrio parahaemolyticus 49.0277777777778 720.0 observed 1 1
HB875836 Shewanella oneidensis 49.0277777777778 720.0 observed 1 1
HB878194 Rhodopirellula baltica 56.3888888888889 720.0 observed 1 1
HB878384 Photobacterium profundum 46.5277777777778 720.0 observed 1 1
HB878386 Photobacterium profundum 43.4722222222222 720.0 observed 1 1
HB907209 Thiocapsa roseopersicina 65.2777777777778 720.0 observed 1 1
HB907846 Magnetococcus marinus mc-1 49.5833333333333 720.0 observed 1 1
HB937666 Archaeoglobus fulgidus dsm 4304 50.9722222222222 720.0 observed 1 1
HB961400 Vibrio cholerae o1 biovar el tor str. n16961 51.1111111111111 720.0 observed 1 1
HB961508 Vibrio parahaemolyticus rimd 2210633 46.8055555555556 720.0 observed 1 1
HB961664 Aliivibrio fischeri es114 43.1944444444444 720.0 observed 1 1
HC498205 Methanococcus maripaludis 35.2777777777778 720.0 observed 1 1
HC498319 Synechococcus sp. 59.4444444444444 720.0 observed 1 1
HC498323 Synechococcus sp. 61.5277777777778 720.0 observed 1 1
HC906833 Prochlorococcus marinus 30.5555555555556 720.0 observed 1 1
HV761149 Aequorea victoria 61.5277777777778 720.0 observed 1 1
HW534261 Aequorea victoria 38.75 720.0 observed 1 1
HW907032 Vibrio sp. 38.6111111111111 720.0 observed 1 1
JA389482 Aequorea victoria 61.6666666666667 720.0 observed 1 1
LF707639 Aequorea victoria 62.2222222222222 720.0 observed 1 1
LF947189 Aequorea victoria 61.5277777777778 720.0 observed 1 1
LQ980091 Salmo salar 60.2777777777778 720.0 observed 1 1
MP927451 Aequorea victoria 61.6666666666667 720.0 observed 1 1
PA543423 Aequorea victoria 37.6388888888889 720.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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