Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

28 rows where Is_annotated = 1, Sequence_length = "726.0" and Sequence_status = "observed"

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Sequence_status 1

  • observed · 28 ✖

Is_protein_coding_sequence 1

  • 1 28

Is_annotated 1

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GN122940 Prochlorococcus marinus str. mit 9515 31.404958677686 726.0 observed 1 1
GN122976 Prochlorococcus marinus str. mit 9312 31.129476584022 726.0 observed 1 1
GN122984 Saccharophagus degradans 2-40 48.3471074380165 726.0 observed 1 1
GN124703 Prochlorococcus marinus subsp. marinus str. ccmp1375 37.0523415977961 726.0 observed 1 1
GN124705 Prochlorococcus marinus subsp. pastoris str. ccmp1986 29.0633608815427 726.0 observed 1 1
GN124707 Prochlorococcus marinus str. mit 9313 53.8567493112948 726.0 observed 1 1
GN124711 Prochlorococcus marinus str. as9601 30.4407713498623 726.0 observed 1 1
GN124715 Prochlorococcus marinus str. mit 9215 30.5785123966942 726.0 observed 1 1
GN124717 Prochlorococcus marinus str. mit 9211 39.2561983471074 726.0 observed 1 1
GN124729 Prochlorococcus marinus str. mit 9312 30.0275482093664 726.0 observed 1 1
GN124737 Synechococcus sp. cc9311 58.5399449035813 726.0 observed 1 1
GN124745 Synechococcus sp. rs9917 67.7685950413223 726.0 observed 1 1
HB874529 Vibrio parahaemolyticus 50.137741046832 726.0 observed 1 1
HB874551 Vibrio vulnificus 50.8264462809917 726.0 observed 1 1
HB874721 Photobacterium profundum 47.2451790633609 726.0 observed 1 1
HB877970 Oceanobacillus iheyensis 36.0881542699724 726.0 observed 1 1
HB878278 Shewanella oneidensis 54.5454545454545 726.0 observed 1 1
HB878394 Photobacterium profundum 43.801652892562 726.0 observed 1 1
HC497921 Synechococcus elongatus pcc 6301 53.030303030303 726.0 observed 1 1
HC900038 Methanococcus maripaludis 33.7465564738292 726.0 observed 1 1
HC906687 Ruegeria sp. tm1040 60.8815426997245 726.0 observed 1 1
HH829676 Pyrococcus furiosus 42.0110192837466 726.0 observed 1 1
HV535139 Neopyropia yezoensis 62.8099173553719 726.0 observed 1 1
HZ531061 Prochlorococcus marinus 37.7410468319559 726.0 observed 1 1
JC250816 Archaeoglobus fulgidus 43.801652892562 726.0 observed 1 1
LP129408 Alcanivorax hongdengensis 53.9944903581267 726.0 observed 1 1
LZ221740 Oncorhynchus mykiss 57.9889807162534 726.0 observed 1 1
MQ067826 Aequorea victoria 61.1570247933884 726.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );