Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
10,512 rows where Is_annotated = 1 and Sequence_status = "observed"
This data as json, CSV (advanced)
Species_name >30
- Vibrio cholerae 239
- Vibrio vulnificus 239
- Prochlorococcus marinus 231
- Synechococcus sp. 214
- Pyrococcus furiosus 200
- Vibrio parahaemolyticus 186
- Photobacterium profundum ss9 163
- Shewanella oneidensis mr-1 159
- Thermotoga maritima 159
- Saccharophagus degradans 2-40 156
- Vibrio parahaemolyticus rimd 2210633 154
- Photobacterium profundum 152
- Shewanella oneidensis 147
- Ruegeria pomeroyi dss-3 145
- Vibrio vulnificus yj016 129
- Desulfotalea psychrophila lsv54 118
- Ruegeria sp. tm1040 117
- Oceanobacillus iheyensis 115
- Colwellia psychrerythraea 34h 113
- Trichodesmium erythraeum ims101 113
- Methanocaldococcus jannaschii 112
- Novosphingobium aromaticivorans dsm 12444 108
- Vibrio vulnificus cmcp6 105
- Oceanobacillus iheyensis hte831 104
- Crocosphaera watsonii wh 8501 103
- Ostreococcus tauri 103
- Magnetococcus marinus mc-1 100
- Photobacterium sp. ska34 100
- Vibrio cholerae o1 biovar el tor str. n16961 99
- Pyrococcus horikoshii 98
- …
Sequence_status 1
- observed · 10,512 ✖
Is_protein_coding_sequence 1
- 1 10,512
Is_annotated 1
- 1 · 10,512 ✖
Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
---|---|---|---|---|---|---|
A81885 | Actinia equina | 47.4137931034483 | 696.0 | observed | 1 | 1 |
AX008612 | Zobellia galactanivorans | 43.3574879227053 | 828.0 | observed | 1 | 1 |
AX020429 | Vibrio cholerae | 46.0093896713615 | 852.0 | observed | 1 | 1 |
AX035840 | Haliotis tuberculata | 48.0558325024925 | 1003.0 | observed | 1 | 1 |
AX035843 | Haliotis tuberculata | 47.3306772908367 | 1255.0 | observed | 1 | 1 |
AX035847 | Megathura crenulata | 43.4332988624612 | 967.0 | observed | 1 | 1 |
AX035851 | Megathura crenulata | 43.8356164383562 | 949.0 | observed | 1 | 1 |
AX035854 | Megathura crenulata | 45.8502024291498 | 988.0 | observed | 1 | 1 |
AX035855 | Megathura crenulata | 47.741935483871 | 310.0 | observed | 1 | 1 |
AX035882 | Haliotis tuberculata | 49.9197431781701 | 1246.0 | observed | 1 | 1 |
AX035888 | Megathura crenulata | 43.796394485684 | 943.0 | observed | 1 | 1 |
AX035911 | Haliotis tuberculata | 50.86887835703 | 1266.0 | observed | 1 | 1 |
AX035912 | Haliotis tuberculata | 46.5393794749403 | 1257.0 | observed | 1 | 1 |
AX035913 | Haliotis tuberculata | 44.524959742351 | 1242.0 | observed | 1 | 1 |
AX035914 | Haliotis tuberculata | 45.682001614205 | 1239.0 | observed | 1 | 1 |
AX035915 | Haliotis tuberculata | 45.1587301587302 | 1260.0 | observed | 1 | 1 |
AX035916 | Haliotis tuberculata | 45.8033573141487 | 1251.0 | observed | 1 | 1 |
AX035917 | Haliotis tuberculata | 51.4474772539289 | 1209.0 | observed | 1 | 1 |
AX035918 | Haliotis tuberculata | 47.0703125 | 1536.0 | observed | 1 | 1 |
AX035920 | Haliotis tuberculata | 49.9598393574297 | 1245.0 | observed | 1 | 1 |
AX035922 | Haliotis tuberculata | 46.0547504025765 | 1242.0 | observed | 1 | 1 |
AX035923 | Haliotis tuberculata | 47.255369928401 | 1257.0 | observed | 1 | 1 |
AX035924 | Haliotis tuberculata | 48.3173076923077 | 1248.0 | observed | 1 | 1 |
AX035925 | Haliotis tuberculata | 51.1608623548922 | 1206.0 | observed | 1 | 1 |
AX035927 | Megathura crenulata | 43.3747412008282 | 966.0 | observed | 1 | 1 |
AX035928 | Megathura crenulata | 43.3977455716586 | 1242.0 | observed | 1 | 1 |
AX035929 | Megathura crenulata | 44.7411003236246 | 1236.0 | observed | 1 | 1 |
AX035930 | Megathura crenulata | 45.4256165473349 | 1257.0 | observed | 1 | 1 |
AX035931 | Megathura crenulata | 45.8532695374801 | 1254.0 | observed | 1 | 1 |
AX035932 | Megathura crenulata | 49.2156862745098 | 510.0 | observed | 1 | 1 |
AX035933 | Megathura crenulata | 43.7367303609342 | 942.0 | observed | 1 | 1 |
AX035934 | Megathura crenulata | 44.5512820512821 | 1248.0 | observed | 1 | 1 |
AX035935 | Megathura crenulata | 43.6754176610979 | 1257.0 | observed | 1 | 1 |
AX035936 | Megathura crenulata | 43.3414043583535 | 1239.0 | observed | 1 | 1 |
AX035937 | Megathura crenulata | 45.003996802558 | 1251.0 | observed | 1 | 1 |
AX035938 | Megathura crenulata | 46.6666666666667 | 1185.0 | observed | 1 | 1 |
AX035939 | Megathura crenulata | 47.8964401294498 | 309.0 | observed | 1 | 1 |
AX038932 | Aeromonas salmonicida | 53.9906103286385 | 213.0 | observed | 1 | 1 |
AX038982 | Aliivibrio salmonicida | 43.6619718309859 | 213.0 | observed | 1 | 1 |
AX077080 | Pyrococcus abyssi | 44.5807770961145 | 489.0 | observed | 1 | 1 |
AX077081 | Pyrococcus horikoshii | 40.9836065573771 | 244.0 | observed | 1 | 1 |
AX077082 | Pyrococcus furiosus | 43.1137724550898 | 501.0 | observed | 1 | 1 |
AX081206 | Ptilota filicina | 51.1612475116125 | 1507.0 | observed | 1 | 1 |
AX081208 | Ptilota filicina | 51.0071474983756 | 1539.0 | observed | 1 | 1 |
AX081734 | Pyrococcus furiosus | 43.3194637078132 | 2163.0 | observed | 1 | 1 |
AX081736 | Pyrococcus furiosus | 40.9048938134811 | 1083.0 | observed | 1 | 1 |
AX081737 | Pyrococcus furiosus | 39.1462306993642 | 1101.0 | observed | 1 | 1 |
AX081738 | Pyrococcus furiosus | 42.5465838509317 | 966.0 | observed | 1 | 1 |
AX081743 | Pyrococcus furiosus | 39.5091053048298 | 1263.0 | observed | 1 | 1 |
AX083239 | Candidatus endobugula sertula | 47.6666666666667 | 300.0 | observed | 1 | 1 |
AX088525 | Haliotis tuberculata | 47.1622701838529 | 1251.0 | observed | 1 | 1 |
AX088592 | Haliotis tuberculata | 53.2374100719424 | 973.0 | observed | 1 | 1 |
AX088598 | Haliotis tuberculata | 47.0588235294118 | 221.0 | observed | 1 | 1 |
AX088606 | Haliotis tuberculata | 45.188679245283 | 1060.0 | observed | 1 | 1 |
AX088608 | Haliotis tuberculata | 59.1463414634146 | 164.0 | observed | 1 | 1 |
AX088609 | Haliotis tuberculata | 49.0314769975787 | 826.0 | observed | 1 | 1 |
AX088623 | Haliotis tuberculata | 48.4162895927602 | 221.0 | observed | 1 | 1 |
AX088631 | Haliotis tuberculata | 46.5468306527909 | 1057.0 | observed | 1 | 1 |
AX088633 | Haliotis tuberculata | 54.8780487804878 | 164.0 | observed | 1 | 1 |
AX088634 | Haliotis tuberculata | 49.273607748184 | 826.0 | observed | 1 | 1 |
AX088650 | Megathura crenulata | 45.719661335842 | 1063.0 | observed | 1 | 1 |
AX088652 | Megathura crenulata | 51.219512195122 | 164.0 | observed | 1 | 1 |
AX088660 | Megathura crenulata | 43.940990516333 | 949.0 | observed | 1 | 1 |
AX088665 | Megathura crenulata | 44.2452830188679 | 1060.0 | observed | 1 | 1 |
AX088668 | Megathura crenulata | 45.0363196125908 | 826.0 | observed | 1 | 1 |
AX098604 | Shewanella massilia | 49.9798954563731 | 2487.0 | observed | 1 | 1 |
AX098606 | Shewanella colwelliana | 49.5375954965822 | 2487.0 | observed | 1 | 1 |
AX101213 | Pyrococcus furiosus | 39.3617021276596 | 846.0 | observed | 1 | 1 |
AX106946 | Archaeoglobus fulgidus | 51.8087855297158 | 774.0 | observed | 1 | 1 |
AX109366 | Raoultella ornithinolytica | 54.5893719806763 | 828.0 | observed | 1 | 1 |
AX109939 | Cellulophaga lytica | 37.7733598409543 | 1509.0 | observed | 1 | 1 |
AX109981 | Methanocaldococcus jannaschii | 38.2633053221289 | 1785.0 | observed | 1 | 1 |
AX110874 | Raoultella ornithinolytica | 52.6785714285714 | 336.0 | observed | 1 | 1 |
AX112909 | Vibrio cholerae | 33.5120643431635 | 373.0 | observed | 1 | 1 |
AX127436 | Bruguiera gymnorhiza | 51.2129380053908 | 371.0 | observed | 1 | 1 |
AX128445 | Thermotoga maritima | 46.6666666666667 | 270.0 | observed | 1 | 1 |
AX137949 | Isavirus salaris | 47.2177201512696 | 1851.0 | observed | 1 | 1 |
AX168071 | Aliivibrio fischeri | 43.0379746835443 | 711.0 | observed | 1 | 1 |
AX191831 | Isavirus salaris | 46.0757156048015 | 1083.0 | observed | 1 | 1 |
AX191833 | Isavirus salaris | 43.3506044905009 | 1737.0 | observed | 1 | 1 |
AX191835 | Isavirus salaris | 45.929734361611 | 1167.0 | observed | 1 | 1 |
AX201842 | Corallina officinalis | 55.2587646076795 | 1797.0 | observed | 1 | 1 |
AX212216 | Pyrococcus sp. | 40.8163265306122 | 1617.0 | observed | 1 | 1 |
AX252411 | Piscirickettsia salmonis | 41.1167512690355 | 591.0 | observed | 1 | 1 |
AX252413 | Piscirickettsia salmonis | 45.6032719836401 | 489.0 | observed | 1 | 1 |
AX252478 | Vibrio cholerae | 51.0324483775811 | 678.0 | observed | 1 | 1 |
AX252479 | Vibrio cholerae | 50.3937007874016 | 381.0 | observed | 1 | 1 |
AX252480 | Vibrio cholerae | 49.6570644718793 | 729.0 | observed | 1 | 1 |
AX252481 | Vibrio cholerae | 50.0522466039707 | 957.0 | observed | 1 | 1 |
AX338930 | Zostera marina | 49.4142705005325 | 939.0 | observed | 1 | 1 |
AX339682 | Rhodothermus marinus | 65.5216284987277 | 786.0 | observed | 1 | 1 |
AX343037 | Aequorea victoria | 61.1111111111111 | 720.0 | observed | 1 | 1 |
AX343039 | Aequorea victoria | 61.1111111111111 | 720.0 | observed | 1 | 1 |
AX343041 | Aequorea victoria | 39.0516039051604 | 717.0 | observed | 1 | 1 |
AX343043 | Aequorea victoria | 38.9121338912134 | 717.0 | observed | 1 | 1 |
AX348239 | Aequorea victoria | 40.1850462615654 | 3999.0 | observed | 1 | 1 |
AX354207 | Lactococcus garvieae | 42.4657534246575 | 438.0 | observed | 1 | 1 |
AX354209 | Lactococcus garvieae | 42.0091324200913 | 438.0 | observed | 1 | 1 |
AX357510 | Aequorea victoria | 38.1284916201117 | 716.0 | observed | 1 | 1 |
AX376827 | Synechococcus elongatus | 54.1434410999628 | 2691.0 | observed | 1 | 1 |
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CREATE TABLE Marine_Sequences ( Sequence_accession_number TEXT PRIMARY KEY, Species_name TEXT, GC_content TEXT, Sequence_length TEXT, Sequence_status TEXT, Is_protein_coding_sequence INTEGER, Is_annotated INTEGER, FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name), FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number) );