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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

14 rows where Is_annotated = 1 and Species_name = "Nannochloropsis gaditana"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
LP889302 Nannochloropsis gaditana 57.9089194287254 3711.0 observed 1 1
LQ020512 Nannochloropsis gaditana 54.857621440536 1194.0 observed 1 1
LQ020518 Nannochloropsis gaditana 61.0650069156293 1446.0 observed 1 1
LQ020530 Nannochloropsis gaditana 50.0497512437811 1005.0 observed 1 1
LQ020568 Nannochloropsis gaditana 55.4726368159204 402.0 observed 1 1
LQ020570 Nannochloropsis gaditana 54.7008547008547 468.0 observed 1 1
LQ773498 Nannochloropsis gaditana 60.2564102564103 156.0 observed 1 1
LV571813 Nannochloropsis gaditana 57.8366445916115 1359.0 observed 1 1
LV571815 Nannochloropsis gaditana 55.812324929972 1428.0 observed 1 1
LV571817 Nannochloropsis gaditana 56.8627450980392 1224.0 observed 1 1
LV571819 Nannochloropsis gaditana 57.8811369509044 1548.0 observed 1 1
LV571821 Nannochloropsis gaditana 57.9667644183773 1023.0 observed 1 1
MD388351 Nannochloropsis gaditana 60.8832807570978 1902.0 observed 1 1
MQ064971 Nannochloropsis gaditana 62.7741228070175 1824.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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