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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

35 rows where Is_protein_coding_sequence = 0 and Species_name = "Cenarchaeum symbiosum"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • observed 35
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD250981 Cenarchaeum symbiosum 55.4821504333596 32998.0 observed 0 0
BD250982 Cenarchaeum symbiosum 58.5737179487179 42432.0 observed 0 0
BD251022 Cenarchaeum symbiosum 57.5 40.0 observed 0 0
BD251023 Cenarchaeum symbiosum 55.0 40.0 observed 0 0
BD251024 Cenarchaeum symbiosum 60.9756097560976 41.0 observed 0 0
BD251025 Cenarchaeum symbiosum 53.6585365853659 41.0 observed 0 0
BD251026 Cenarchaeum symbiosum 50.0 42.0 observed 0 0
BD251027 Cenarchaeum symbiosum 54.7619047619048 42.0 observed 0 0
BD251028 Cenarchaeum symbiosum 50.0 42.0 observed 0 0
BD251029 Cenarchaeum symbiosum 50.0 42.0 observed 0 0
BD251030 Cenarchaeum symbiosum 51.1627906976744 43.0 observed 0 0
BD251031 Cenarchaeum symbiosum 51.1627906976744 43.0 observed 0 0
BD251033 Cenarchaeum symbiosum 55.8139534883721 43.0 observed 0 0
BD251034 Cenarchaeum symbiosum 53.4883720930233 43.0 observed 0 0
BD251035 Cenarchaeum symbiosum 53.4883720930233 43.0 observed 0 0
BD251036 Cenarchaeum symbiosum 58.1395348837209 43.0 observed 0 0
BD251037 Cenarchaeum symbiosum 65.1162790697674 43.0 observed 0 0
BD251038 Cenarchaeum symbiosum 59.0909090909091 44.0 observed 0 0
BD251039 Cenarchaeum symbiosum 62.7906976744186 43.0 observed 0 0
BD251040 Cenarchaeum symbiosum 64.2857142857143 42.0 observed 0 0
BD251041 Cenarchaeum symbiosum 58.1395348837209 43.0 observed 0 0
BD251042 Cenarchaeum symbiosum 45.4545454545455 44.0 observed 0 0
BD251043 Cenarchaeum symbiosum 52.2727272727273 44.0 observed 0 0
BD251044 Cenarchaeum symbiosum 63.6363636363636 44.0 observed 0 0
BD251045 Cenarchaeum symbiosum 64.4444444444444 45.0 observed 0 0
BD251046 Cenarchaeum symbiosum 66.6666666666667 51.0 observed 0 0
BD251047 Cenarchaeum symbiosum 65.9574468085106 47.0 observed 0 0
BD251048 Cenarchaeum symbiosum 36.6666666666667 60.0 observed 0 0
BD251049 Cenarchaeum symbiosum 35.0 60.0 observed 0 0
BD251050 Cenarchaeum symbiosum 53.7313432835821 67.0 observed 0 0
BD251051 Cenarchaeum symbiosum 62.1212121212121 66.0 observed 0 0
BD251052 Cenarchaeum symbiosum 61.1570247933884 121.0 observed 0 0
BD251053 Cenarchaeum symbiosum 57.1428571428571 98.0 observed 0 0
BD251054 Cenarchaeum symbiosum 43.6440677966102 236.0 observed 0 0
BD251055 Cenarchaeum symbiosum 44.6808510638298 235.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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