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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Is_protein_coding_sequence = 0 and Species_name = "Piscirickettsia salmonis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 1

  • 0 13
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX252409 Piscirickettsia salmonis 42.3267326732673 404.0 observed 0 0
AX252415 Piscirickettsia salmonis 37.7049180327869 1098.0 observed 0 0
AX252418 Piscirickettsia salmonis 39.0243902439024 164.0 observed 0 0
AX252424 Piscirickettsia salmonis 37.3913043478261 115.0 observed 0 0
AX252426 Piscirickettsia salmonis 39.1061452513966 179.0 observed 0 0
AX252428 Piscirickettsia salmonis 47.6923076923077 390.0 observed 0 0
AX252432 Piscirickettsia salmonis 51.1764705882353 170.0 observed 0 0
AX252434 Piscirickettsia salmonis 45.2261306532663 199.0 observed 0 0
CS079012 Piscirickettsia salmonis 38.9101338432122 2092.0 observed 0 0
CS417594 Piscirickettsia salmonis 34.1666666666667 120.0 observed 0 0
CS417606 Piscirickettsia salmonis 38.9579349904398 2092.0 observed 0 0
HB446942 Piscirickettsia salmonis 38.9579349904398 2092.0 observed 0 0
MS810632 Piscirickettsia salmonis 29.8325722983257 657.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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